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[185088_at]

Description F11G11.4 /REP_DB=WormBase Gene ID /WP=CE07057 /TR=P91246 /GB=AAB37839.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 1.7
(-3)
A 		5.2
(1.2)
A 		2.5
(-2)
A 		6.7
(3)
A 		5
B 4.6
(-0.7)
A 		4.1
(-1.6)
A 		6.7
(3)
A 		3.3
(-3)
A 		3
C 2.6
(-3)
A 		4
(-0.9)
A 		3.4
(-1.8)
A 		6.6
(3)
A 		4
avr 3
(-3) 		4.4
(0.4) 		4.2
(-0.1) 		5.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 6
(-2.7)
A 		1.5
(-3)
A 		0.9
(-3)
A 		30.4
(-1.3)
A 		41.1
(-0.7)
A 		106.8
(3)
A 		106
B 1
(-3)
A 		1.1
(-3)
A 		2.8
(-2.9)
A 		2.3
(-2.9)
A 		81
(3)
A 		70.5
(2.2)
P 		80
C 3.2
(-3)
A 		4.7
(-2.9)
A 		3.6
(-3)
A 		4.6
(-2.9)
A 		50.8
(-0.2)
A 		104.8
(3)
P 		102
avr 3.4
(-2.9) 		2.4
(-3) 		2.4
(-3) 		12.4
(-2.3) 		57.6
(0.6) 		94
(3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.6
(-3)
A 		1.1
(3)
A 		0.7
(-1.8)
A 		1
(1.8)
A 		1
B 1.5
(2.3)
A 		1
(-1)
A 		1.6
(3)
A 		0.7
(-3)
A 		1
C 0.8
(-3)
A 		1.2
(3)
A 		1.2
(3)
A 		1.1
(1.5)
A 		0
avr 1
(-1) 		1.1
(1) 		1.2
(3) 		0.9
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 1.1
(-2.8)
A 		0.5
(-2.9)
A 		0.2
(-3)
A 		7.7
(-1.3)
A 		12.4
(-0.2)
A 		26
(3)
A 		26
B 0.3
(-3)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		0.6
(-2.9)
A 		32.9
(3)
A 		26.3
(1.8)
P 		33
C 1.2
(-2.9)
A 		1.4
(-2.9)
A 		0.9
(-3)
A 		0.9
(-3)
A 		16.4
(-0.3)
A 		35.1
(3)
P 		34
avr 0.9
(-2.9) 		0.8
(-3) 		0.6
(-3) 		3.1
(-2.5) 		20.6
(1.2) 		29.1
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4654
Sequence Type Exemplar sequence
Representative Public ID F11G11.4 NCBI
Target Description F11G11.4 /REP_DB=WormBase Gene ID /WP=CE07057 /TR=P91246 /GB=AAB37839.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062475 NCBI Caenorhabditis elegans F11G11.4 (F11G11.4) mRNA, complete cds. 11/11 None
SNAP00000005481 ENSEMBL cdna:SNAP chromosome:CEL140:II:4861062:4861589:1 11/11 None
GENEFINDER00000005499 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4861062:4861589:1 11/11 None
F11G11.4 ENSEMBL cdna:known chromosome:CEL140:II:4861062:4861589:1 gene:F11G11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4861060-4861588(+) 91.47 100.0
Public Domain and Genome References
Gene Title
Ensembl F11G11.4
Entrez Gene 184365 Entrez gene
SwissProt P91246 EMBL-EBI
WormBase CE07057 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494876 F11G11.4 [Caenorhabditis elegans] gb|AAB37839.1| Hypothetical protein F11G11.4 [Caenorhabditis elegans] 3.0E-37
blast AAB88315 Hypothetical protein C24D10.2 [Caenorhabditis elegans] ref|NP_500731.1| C24D10.2 [Caenorhabditis elegans] 7.0E-35
blast CAE73218 Hypothetical protein CBG20624 [Caenorhabditis briggsae] 8.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494876.1 1 81-103
F11G11.4 1 81-103
SNAP00000005481 1 81-103
GENEFINDER00000005499 1 81-103
Sequence
Target Sequence 
>C. ELEGANS:185088_AT
cacggatgcaggtgacccaacacaaggtgctaaacctcaaggaggctcatcagcaatgct
ggatctgctcggagcactggacaagaaggaagagaagaagaagaaggataagaagggcaa
aaaaggaaagaagtcgaaaggaaagtcaaagaccaagaaagtcagaaaggccgacaagtt
cgaatcgcagaacttcttgtttcgaatcgagggaaccatcttttgtgctggaatcgttgt
cggattggtggtgctgctcgtcttcatcgcagttgcaatcttctttagcgtgaaggctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGGATGCAGGTGACCCAACACAA 349 199 36 Antisense
GTGACCCAACACAAGGTGCTAAACC 287 483 47 Antisense
CAAGGAGGCTCATCAGCAATGCTGG 444 183 73 Antisense
GCAATGCTGGATCTGCTCGGAGCAC 585 321 88 Antisense
CTGCTCGGAGCACTGGACAAGAAGG 313 237 100 Antisense
AAGGCCGACAAGTTCGAATCGCAGA 585 161 202 Antisense
GAATCGCAGAACTTCTTGTTTCGAA 408 329 217 Antisense
CAGAACTTCTTGTTTCGAATCGAGG 11 203 223 Antisense
CGAATCGAGGGAACCATCTTTTGTG 427 247 238 Antisense
CGTCTTCATCGCAGTTGCAATCTTC 151 247 294 Antisense
GCAATCTTCTTTAGCGTGAAGGCTG 154 323 310 Antisense
Sequence Source Affymetrix Proprietary Database