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[185087_s_at]

Description F47C12.4 /REP_DB=WormBase Gene ID /WP=CE10676 /TR=Q20528 /GB=AAC24390.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 38      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 95.3
(3)
P 		26.2
(-3)
A 		77.5
(1.5)
A 		42.2
(-1.6)
A 		69
B 99.5
(3)
P 		50
(-0.6)
A 		17.5
(-3)
A 		54.3
(-0.3)
A 		82
C 104.2
(3)
A 		71.1
(0.9)
A 		7.7
(-3)
A 		55.8
(-0)
A 		97
avr 99.7
(3) 		49.1
(-1.6) 		34.2
(-3) 		50.8
(-1.5) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 25.6
(-2.5)
A 		7.6
(-2.9)
A 		4.7
(-3)
A 		62.1
(-1.5)
A 		135.7
(0.4)
P 		239.2
(3)
P 		235
B 25.2
(-2.4)
A 		4.7
(-3)
A 		30.8
(-2.3)
A 		54.3
(-1.6)
A 		107.7
(-0.1)
P 		217.5
(3)
P 		213
C 30.2
(-2.8)
A 		24.8
(-3)
A 		24.4
(-3)
A 		61.3
(-2)
P 		94.6
(-1)
P 		237.6
(3)
P 		213
avr 27
(-2.6) 		12.4
(-3) 		20
(-2.8) 		59.2
(-1.7) 		112.7
(-0.3) 		231.4
(3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 34.7
(3)
P 		5.7
(-3)
A 		20.3
(0)
A 		6.2
(-2.9)
A 		29
B 31.7
(3)
P 		12.4
(-1.2)
A 		4
(-3)
A 		11.6
(-1.4)
A 		28
C 34.5
(3)
A 		20.5
(0.4)
A 		2.7
(-3)
A 		9.4
(-1.7)
A 		32
avr 33.6
(3) 		12.9
(-2) 		9
(-3) 		9.1
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 4.7
(-2.6)
A 		2.7
(-2.8)
A 		1
(-3)
A 		15.8
(-1.4)
A 		40.9
(1.2)
P 		58.2
(3)
P 		57
B 8.8
(-2.5)
A 		1.6
(-3)
A 		7.5
(-2.6)
A 		14.4
(-2)
A 		43.7
(0.2)
P 		81.1
(3)
P 		80
C 11.2
(-2.6)
A 		7.6
(-2.9)
A 		6.2
(-3)
A 		12.3
(-2.5)
P 		30.6
(-1)
P 		79.5
(3)
P 		73
avr 8.2
(-2.6) 		4
(-3) 		4.9
(-2.9) 		14.2
(-2.1) 		38.4
(-0) 		72.9
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185087_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11231
Sequence Type Exemplar sequence
Representative Public ID F47C12.4 NCBI
Target Description F47C12.4 /REP_DB=WormBase Gene ID /WP=CE10676 /TR=Q20528 /GB=AAC24390.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068044(11), NM_068049(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068044 NCBI Caenorhabditis elegans Y46C8AL.1 (Y46C8AL.1) mRNA, complete cds. 11/11 A 
NM_068049 NCBI Caenorhabditis elegans F47C12.4 (F47C12.4) mRNA, complete cds. 11/11 A 
SNAP00000026878 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3973362:3975657:1 11/11 None
GENEFINDER00000026891 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3973362:3983603:1 11/11 None
SNAP00000030673 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3954078:3956184:-1 11/11 None
GENEFINDER00000030681 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3954078:3956184:-1 11/11 None
Y46C8AL.1 ENSEMBL cdna:known chromosome:CEL140:IV:3953929:3956200:-1 gene:Y46C8AL.1 11/11 A 
F47C12.4 ENSEMBL cdna:known chromosome:CEL140:IV:3973343:3975707:1 gene:F47C12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3973367-3975663(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y46C8AL.1
F47C12.4
Entrez Gene 177153 Entrez gene
177154 Entrez gene
SwissProt Q20528 EMBL-EBI
Q9N3W2 EMBL-EBI
WormBase CE10676 Wormbase
CE21962 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60596 Hypothetical protein Y46C8AL.1 [Caenorhabditis elegans] ref|NP_500445.1| Y46C8AL.1 [Caenorhabditis elegans] 0.0
blast AAC24390 Hypothetical protein F47C12.4 [Caenorhabditis elegans] ref|NP_500450.1| F47C12.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500445.1 1 5-27
NP_500450.1 1 5-27
Y46C8AL.1 1 5-27
F47C12.4 1 5-27
SNAP00000026878 1 5-27
GENEFINDER00000026891 8 5-27,601-623,644-666,681-700,721-740,778-800,821-843,853-875
SNAP00000030673 1 5-27
GENEFINDER00000030681 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:185087_S_AT
ccatctctcacttcaaaggacaggctccagagtttcatccgatggttgacagtcagtcac
ttccgatttggtgcaaattgggaaaagttgtgaagtacaagtttgatgttccaccgggat
ggcttgacttccgtcgactcaatggacaagtggtcctgcattggctctcggaagaaaaac
taaagtttacagacgcagccaaagcatgtgaggcgaaaggagcacacttggctggtatta
attcgctgaaagaagcagaacagttaggaaatcatgttgtcggagctaagttgaacaacg
agcagttctggcttggagcgcaacgtaagaccgaatgcttggaaaataacgactggaaag
ctccttgcacacgtggcaaaatcttcgaatggaacaataacgtggcgacggatttccgtg
aagagtggtggaagaaaaataacaataaccattctccaaatccatcaggcactggtcaac
gatgcttgtcttttgcctttggggatctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCTCTCACTTCAAAGGACAGGC 538 271 1115 Antisense
AAGGACAGGCTCCAGAGTTTCATCC 364 161 1130 Antisense
AGGCTCCAGAGTTTCATCCGATGGT 535 53 1136 Antisense
TCAGTCACTTCCGATTTGGTGCAAA 18 623 1167 Antisense
ACTTCCGTCGACTCAATGGACAAGT 561 15 1241 Antisense
ACAACGAGCAGTTCTGGCTTGGAGC 340 113 1409 Antisense
CAGTTCTGGCTTGGAGCGCAACGTA 657 205 1417 Antisense
GACCGAATGCTTGGAAAATAACGAC 645 379 1443 Antisense
AATCCATCAGGCACTGGTCAACGAT 225 167 1573 Antisense
GGTCAACGATGCTTGTCTTTTGCCT 597 503 1588 Antisense
TTGTCTTTTGCCTTTGGGGATCTGT 694 705 1600 Antisense
Sequence Source Affymetrix Proprietary Database