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[185085_at]

Description Y71A12B.6 /REP_DB=WormBase Gene ID /WP=CE26239 /TR=Q9GRV4 /GB=CAC14421.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 48      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 21.7
(-0.9)
A 		9.3
(-3)
A 		33.3
(1)
A 		45.1
(3)
P 		36
B 31
(0.2)
A 		49.9
(3)
A 		40.7
(1.6)
A 		9.1
(-3)
A 		41
C 18
(-3)
A 		42.4
(1.2)
A 		52.6
(3)
A 		27.6
(-1.3)
A 		35
avr 23.6
(-3) 		33.9
(0.3) 		42.2
(3) 		27.3
(-1.8) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 49.3
(3)
A 		16.4
(-1.4)
A 		24.6
(-0.3)
A 		4.8
(-3)
A 		6.6
(-2.8)
A 		8.5
(-2.5)
A 		45
B 22.8
(-3)
A 		39.1
(1)
A 		33.9
(-0.3)
A 		47.2
(3)
A 		44.9
(2.4)
A 		31.4
(-0.9)
A 		24
C 33.4
(3)
A 		8.1
(-2.6)
A 		31.2
(2.5)
A 		6.1
(-3)
A 		21.5
(0.4)
A 		7.5
(-2.7)
A 		27
avr 35.2
(3) 		21.2
(-1.3) 		29.9
(1.4) 		19.4
(-1.9) 		24.3
(-0.4) 		15.8
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.9
(2.3)
A 		2
(-3)
A 		8.7
(3)
A 		6.6
(1.1)
P 		7
B 9.9
(1.6)
A 		12.3
(3)
A 		9.4
(1.3)
A 		1.9
(-3)
A 		10
C 6
(-2.4)
A 		12.2
(0.3)
A 		18.3
(3)
A 		4.7
(-3)
A 		14
avr 7.9
(-0.3) 		8.8
(0.4) 		12.1
(3) 		4.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.1
(3)
A 		5.8
(0.5)
A 		5.3
(0.1)
A 		1.2
(-3)
A 		2
(-2.4)
A 		2.1
(-2.3)
A 		8
B 7.9
(-3)
A 		13
(-0)
A 		8.2
(-2.8)
A 		12.5
(-0.3)
A 		18.2
(3)
A 		11.7
(-0.8)
A 		10
C 12.4
(3)
A 		2.5
(-2.3)
A 		8
(0.6)
A 		1.2
(-3)
A 		7
(0.1)
A 		2.5
(-2.3)
A 		11
avr 9.8
(3) 		7.1
(-0.4) 		7.2
(-0.3) 		5
(-3) 		9.1
(2.1) 		5.4
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185085_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2287
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.6 NCBI
Target Description Y71A12B.6 /REP_DB=WormBase Gene ID /WP=CE26239 /TR=Q9GRV4 /GB=CAC14421.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061030 NCBI Caenorhabditis elegans Y71A12B.6 (Y71A12B.6) mRNA, complete cds. 11/11 None
SNAP00000038363 ENSEMBL cdna:SNAP chromosome:CEL140:I:13927514:13931159:1 10/11 None
GENEFINDER00000038396 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13927867:13930240:1 11/11 None
Y71A12B.6 ENSEMBL cdna:known chromosome:CEL140:I:13927493:13930240:1 gene:Y71A12B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13927423-13930171(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12B.6
Entrez Gene 190576 Entrez gene
SwissProt Q9GRV4 EMBL-EBI
WormBase CE26239 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14421 Hypothetical protein Y71A12B.6 [Caenorhabditis elegans] ref|NP_493431.1| Y71A12B.6 [Caenorhabditis elegans] 0.0
blast CAC14421 Hypothetical protein Y71A12B.6 [Caenorhabditis elegans] ref|NP_493431.1| Y71A12B.6 [Caenorhabditis elegans] 1.0E-165
blast CAC14421 Hypothetical protein Y71A12B.6 [Caenorhabditis elegans] ref|NP_493431.1| Y71A12B.6 [Caenorhabditis elegans] 1.0E-153
blast CAE56464 Hypothetical protein CBG24174 [Caenorhabditis briggsae] 8.0E-55
blast CAE56464 Hypothetical protein CBG24174 [Caenorhabditis briggsae] 3.0E-52
blast CAB81990 Hypothetical protein Y71A12B.5 [Caenorhabditis elegans] ref|NP_493430.1| Y71A12B.5 [Caenorhabditis elegans] 3.0E-45
blast CAE56464 Hypothetical protein CBG24174 [Caenorhabditis briggsae] 1.0E-42
Sequence
Target Sequence 
>C. ELEGANS:185085_AT
gaattctatgaagttcggcgccgaaaccgccaactacacctatcgagagtttgacatcac
tgtatccaacagcctttggacattcacccccgtcccagcttgcccgaagaacttcacaat
ggttacgagacctaaagggcagtggtgtataggggtcgtccccgcaaaagcctgcataac
tcaaaaacaaggctcgtcaatgtgcaccaagagctatggaaattcgattttgagtggtgt
agagaattttgaggagtatggcttgattcaagatcttgcccaaccccacctcacggatct
tcccagtggagccgctggccgtagcaccgtaggattttggataaacggcgatcgcaagcc
aatttgcacaggtgttaataaaaccgctagctgtaacggcacaaatgaattcaccttctc
ggaccccacactctctcttaatccaaccgggtacatctggggagtcgaccagccaagtgg
tactttagcaaaggactcgttgtgtgttcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCTATGAAGTTCGGCGCCGAA 301 325 336 Antisense
GACATCACTGTATCCAACAGCCTTT 226 369 388 Antisense
GGCAGTGGTGTATAGGGGTCGTCCC 81 535 473 Antisense
TCCCCGCAAAAGCCTGCATAACTCA 402 597 494 Antisense
AAACAAGGCTCGTCAATGTGCACCA 363 129 520 Antisense
TGATTCAAGATCTTGCCCAACCCCA 277 563 599 Antisense
CTGGCCGTAGCACCGTAGGATTTTG 484 241 650 Antisense
ACGGCGATCGCAAGCCAATTTGCAC 338 97 680 Antisense
CTCTCTCTTAATCCAACCGGGTACA 584 221 766 Antisense
GGGAGTCGACCAGCCAAGTGGTACT 595 493 795 Antisense
GCAAAGGACTCGTTGTGTGTTCACT 36 319 823 Antisense
Sequence Source Affymetrix Proprietary Database