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[185084_at]

Description T08E11.3 /REP_DB=WormBase Gene ID /WP=CE19570 /TR=O76641 /GB=AAC26316.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 31      4grp_high_8_8 > 09      6grp_total > 43      4grp_total > 23      6grp_high1_sub > 03      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 77.6
(0.5)
P 		48.8
(-2.6)
P 		45.4
(-3)
P 		100.8
(3)
P 		55
B 122.6
(3)
P 		81.1
(-2.1)
P 		73.3
(-3)
A 		82.7
(-1.9)
P 		49
C 141.7
(3)
P 		63.3
(-3)
M 		79
(-1.8)
P 		106.4
(0.3)
P 		78
avr 114
(3) 		64.4
(-3) 		65.9
(-2.8) 		96.6
(0.9) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 94.5
(-0.4)
P 		85
(-1.2)
P 		137
(3)
P 		62.5
(-3)
P 		80.7
(-1.5)
A 		79.4
(-1.6)
P 		75
B 59.5
(-3)
P 		93.5
(2.9)
P 		94.2
(3)
P 		77.1
(0)
P 		78.9
(0.4)
P 		67
(-1.7)
P 		35
C 84.7
(-1.2)
P 		111
(2.1)
P 		117.9
(3)
P 		96.5
(0.3)
P 		69.9
(-3)
P 		71.2
(-2.8)
P 		48
avr 79.6
(-2) 		96.5
(0.3) 		116.4
(3) 		78.7
(-2.2) 		76.5
(-2.5) 		72.5
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 28.2
(3)
P 		10.6
(-3)
P 		11.9
(-2.6)
P 		14.8
(-1.6)
P 		18
B 39.1
(3)
P 		20
(-2.2)
P 		17
(-3)
A 		17.6
(-2.8)
P 		22
C 46.9
(3)
P 		18.2
(-2.9)
M 		27.5
(-1)
P 		17.9
(-3)
P 		29
avr 38.1
(3) 		16.3
(-3) 		18.8
(-2.3) 		16.8
(-2.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 17.4
(-2.3)
P 		30.2
(3)
P 		29.8
(2.8)
P 		15.8
(-3)
P 		24.4
(0.6)
A 		19.3
(-1.5)
P 		14
B 20.7
(-2.8)
P 		31.1
(2.5)
P 		22.9
(-1.7)
P 		20.4
(-3)
P 		32.1
(3)
P 		25
(-0.6)
P 		12
C 31.4
(2)
P 		33.9
(3)
P 		30
(1.4)
P 		19.4
(-3)
P 		22.6
(-1.7)
P 		23.8
(-1.2)
P 		15
avr 23.2
(-0.9) 		31.7
(3) 		27.6
(1.1) 		18.5
(-3) 		26.4
(0.6) 		22.7
(-1.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185084_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5353
Sequence Type Exemplar sequence
Representative Public ID T08E11.3 NCBI
Target Description T08E11.3 /REP_DB=WormBase Gene ID /WP=CE19570 /TR=O76641 /GB=AAC26316.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061686(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061686 NCBI Caenorhabditis elegans T08E11.3 (T08E11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000018379 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1826542:1833439:1 10/11 None
T08E11.3 ENSEMBL cdna:known chromosome:CEL140:II:1830650:1831824:1 gene:T08E11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018372 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1830648-1831823(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08E11.3
Entrez Gene 353389 Entrez gene
SwissProt O76641 EMBL-EBI
WormBase CE19570 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26316 Hypothetical protein T08E11.3 [Caenorhabditis elegans] ref|NP_494087.1| T08E11.3 [Caenorhabditis elegans] 0.0
blast AAC26315 Hypothetical protein T08E11.2 [Caenorhabditis elegans] ref|NP_494088.1| T08E11.2 [Caenorhabditis elegans] 1.0E-176
blast AAC26316 Hypothetical protein T08E11.3 [Caenorhabditis elegans] ref|NP_494087.1| T08E11.3 [Caenorhabditis elegans] 1.0E-176
blast AAC26317 Hypothetical protein T08E11.4 [Caenorhabditis elegans] ref|NP_494086.2| T08E11.4 [Caenorhabditis elegans] 1.0E-176
blast AAC26317 Hypothetical protein T08E11.4 [Caenorhabditis elegans] ref|NP_494086.2| T08E11.4 [Caenorhabditis elegans] 1.0E-142
blast AAC26315 Hypothetical protein T08E11.2 [Caenorhabditis elegans] ref|NP_494088.1| T08E11.2 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 5.2E-50
Pfam IPR002083 EMBL-EBI MATH 1.0E-43
Pfam IPR002083 EMBL-EBI MATH 1.4E-51
Pfam IPR002083 EMBL-EBI MATH 1.1E-45
Pfam IPR002083 EMBL-EBI MATH 2.3E-53
Pfam IPR002083 EMBL-EBI MATH 2.4E-48
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 1.9E-7
Pfam IPR002083 EMBL-EBI MATH 1.4E-51
Pfam IPR002083 EMBL-EBI MATH 1.1E-45
Sequence
Target Sequence 
>C. ELEGANS:185084_AT
taataaacagtttggattctccgtgcactgaaactggggtccagaaaacttttctgttga
ggcacaccgttcaaaatgtttcaagcattaaagaaggaggtatatacactaccaaagtag
aaacacattacaatattctttgggaaatgaacatagagagaaaagaagggttttttggat
tctatctacaatgtgaaaaaaagcattttgacagcaagaactggtctattgaactggaat
atgctctcacattgaagtcttcaaatggccaaagattgtcttttacggcatcacgcacgt
ttaacgagcctgctagttacggttatgataaattcatcagatgggatgacatggagagaa
agtatgcgatcaacgacagtatcataattgaagctcgagtcaaaattataaaaatgactg
gatttgaagagcggccagctgttggaagactatctggaactttaattccagtaggagatc
gggaatattcaatggaagaatggatggagttggcgtttggattccctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATAAACAGTTTGGATTCTCCGTG 541 635 389 Antisense
TCCGTGCACTGAAACTGGGGTCCAG 89 593 408 Antisense
AAACTTTTCTGTTGAGGCACACCGT 116 129 434 Antisense
GAGGCACACCGTTCAAAATGTTTCA 551 403 447 Antisense
GGGTTTTTTGGATTCTATCTACAAT 158 497 556 Antisense
GCAAGAACTGGTCTATTGAACTGGA 384 321 602 Antisense
TTGAACTGGAATATGCTCTCACATT 407 705 617 Antisense
ATATGCTCTCACATTGAAGTCTTCA 226 21 627 Antisense
TCTTTTACGGCATCACGCACGTTTA 623 613 667 Antisense
TCACGCACGTTTAACGAGCCTGCTA 1 627 679 Antisense
GGAGTTGGCGTTTGGATTCCCTAAT 513 517 894 Antisense
Sequence Source Affymetrix Proprietary Database