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[185083_at]

Description C25A11.1 /REP_DB=WormBase Gene ID /WP=CE04071 /TR=Q18141 /GB=AAK39184.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 48.6
(3)
A 		11.4
(-3)
A 		17.9
(-2)
A 		20.8
(-1.5)
A 		37
B 16.1
(-1.3)
A 		3.9
(-3)
A 		21.9
(-0.4)
A 		46.2
(3)
A 		42
C 44.6
(3)
A 		28.3
(0.1)
A 		10.3
(-3)
A 		30.4
(0.5)
A 		34
avr 36.4
(3) 		14.5
(-3) 		16.7
(-2.4) 		32.5
(1.9) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 11.7
(-1.9)
A 		25.1
(-0.3)
A 		27.2
(-0)
A 		2.6
(-3)
A 		52.2
(3)
A 		42.5
(1.8)
A 		50
B 33.8
(-0.9)
A 		35.3
(-0.6)
A 		23
(-3)
A 		47
(1.6)
A 		54.2
(3)
A 		45.9
(1.4)
A 		31
C 12.2
(-3)
A 		69.5
(3)
A 		57.1
(1.7)
A 		37.4
(-0.4)
A 		26
(-1.6)
A 		36.8
(-0.4)
A 		57
avr 19.2
(-3) 		43.3
(2.8) 		35.8
(1) 		29
(-0.6) 		44.1
(3) 		41.7
(2.4) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.7
(3)
A 		2.5
(-3)
A 		4.7
(-2.1)
A 		3
(-2.8)
A 		15
B 5.1
(-0.2)
A 		1
(-3)
A 		5.1
(-0.2)
A 		9.8
(3)
A 		9
C 14.8
(3)
A 		8.1
(-0.6)
A 		3.6
(-3)
A 		5.1
(-2.2)
A 		11
avr 12.5
(3) 		3.9
(-3) 		4.5
(-2.6) 		6
(-1.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.2
(-2.4)
A 		8.9
(0.3)
A 		5.9
(-0.9)
A 		0.7
(-3)
A 		15.7
(3)
A 		10.4
(0.9)
A 		15
B 11.7
(-0.8)
A 		11.8
(-0.7)
A 		5.6
(-3)
A 		12.5
(-0.5)
A 		22
(3)
A 		17.1
(1.2)
A 		16
C 4.5
(-3)
A 		21.2
(3)
A 		14.5
(0.6)
A 		7.5
(-1.9)
A 		8.4
(-1.6)
A 		12.3
(-0.2)
A 		17
avr 6.1
(-3) 		14
(2.1) 		8.7
(-1.3) 		6.9
(-2.5) 		15.4
(3) 		13.3
(1.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16042
Sequence Type Exemplar sequence
Representative Public ID C25A11.1 NCBI
Target Description C25A11.1 /REP_DB=WormBase Gene ID /WP=CE04071 /TR=Q18141 /GB=AAK39184.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077139
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000378 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9119708:9122998:1 11/11 None
SNAP00000000374 ENSEMBL cdna:SNAP chromosome:CEL140:X:9121495:9122998:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9119979-9122997(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39185 Hypothetical protein C25A11.2 [Caenorhabditis elegans] ref|NP_509539.2| C25A11.2 [Caenorhabditis elegans] 0.0
blast T15600 hypothetical protein C25A11.2 - Caenorhabditis elegans 1.0E-157
blast CAE57280 Hypothetical protein CBG00185 [Caenorhabditis briggsae] 1.0E-69
blast CAE57280 Hypothetical protein CBG00185 [Caenorhabditis briggsae] 2.0E-69
Sequence
Target Sequence 
>C. ELEGANS:185083_AT
aaagaactggatgcttcgtcatgcctggtctagtcacagactatataaaatgtcgtgatg
ggaaaaggatcggcgtttgcaaggagcttttcgccaacaatagtgaacacttgagtaatc
tcttcttcgacaaggtcttcaaggattgtggaaagagcgaaattacggtccgcgaggatt
ctgatattgttcttgatgctcttgatatcatttatcatcgctccctcgcaatcttcccgg
ctcacatcaagcgcgttctggatttgggaagacactggatttcaatcacaattgatcgtt
tcatggagatggtcattcttcactctactcatctttctgttagtgcaaagatcaagcttg
ccgtagactatcattttgatatcataacatacgtcgcccgtcatccgcgttatgcgtcta
attacaatttgtcgctgacggatgaacaactcatgcaagttcgcatcccaggcaataacg
agattgatggaaacgatgctcgtctgctcgtcgatggtcgtcgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAACTGGATGCTTCGTCATGCC 659 121 671 Antisense
GTTTGCAAGGAGCTTTTCGCCAACA 267 449 745 Antisense
GTAATCTCTTCTTCGACAAGGTCTT 117 463 785 Antisense
CTCACATCAAGCGCGTTCTGGATTT 655 227 911 Antisense
ATGGAGATGGTCATTCTTCACTCTA 26 51 973 Antisense
TCACTCTACTCATCTTTCTGTTAGT 247 627 990 Antisense
ATCAAGCTTGCCGTAGACTATCATT 663 25 1021 Antisense
ATATCATAACATACGTCGCCCGTCA 680 19 1049 Antisense
CGTCATCCGCGTTATGCGTCTAATT 300 247 1069 Antisense
CAAGTTCGCATCCCAGGCAATAACG 184 185 1126 Antisense
TCTGCTCGTCGATGGTCGTCGAAGA 451 607 1173 Antisense
Sequence Source Affymetrix Proprietary Database