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[185082_at]

Description T23B12.1 /REP_DB=WormBase Gene ID /WP=CE14026 /TR=O17006 /GB=AAB69934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 94      6grp_total > 77      4grp_total > 21      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 384
1 2 3 4 range
A 488.4
(0.3)
P 		444.9
(-0.7)
P 		333.7
(-3)
P 		618.4
(3)
P 		285
B 517.2
(2.7)
P 		492.4
(1.9)
P 		345.5
(-3)
P 		525.1
(3)
P 		180
C 717.2
(3)
P 		433.6
(-1.8)
P 		365
(-3)
P 		633
(1.6)
P 		352
avr 574.3
(2.6) 		457
(-0.3) 		348.1
(-3) 		592.2
(3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 493.1
(-2.8)
P 		481.5
(-3)
P 		588
(-0.8)
P 		510
(-2.4)
P 		557.1
(-1.4)
P 		768.7
(3)
P 		287
B 380.7
(-3)
P 		444.1
(-2)
P 		460.3
(-1.7)
P 		406.8
(-2.6)
P 		581.6
(0.2)
P 		759.4
(3)
P 		379
C 407.8
(-3)
P 		583.3
(-0.6)
P 		480.3
(-2)
P 		483.9
(-2)
P 		544.4
(-1.1)
P 		849
(3)
P 		441
avr 427.2
(-3) 		503
(-1.8) 		509.5
(-1.6) 		466.9
(-2.3) 		561
(-0.8) 		792.4
(3) 		365
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 177.8
(3)
P 		96.6
(-2.4)
P 		87.2
(-3)
P 		90.5
(-2.8)
P 		91
B 164.9
(3)
P 		121.6
(-0.1)
P 		80.1
(-3)
P 		111.9
(-0.8)
P 		85
C 237.4
(3)
P 		124.7
(-2.2)
P 		127.2
(-2.1)
P 		106.7
(-3)
P 		131
avr 193.4
(3) 		114.3
(-2) 		98.2
(-3) 		103
(-2.7) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 90.9
(-3)
P 		171.2
(2)
P 		128.1
(-0.7)
P 		129.3
(-0.6)
P 		168.1
(1.8)
P 		187.1
(3)
P 		96
B 132.5
(-2.2)
P 		147.8
(-1.6)
P 		111.8
(-2.9)
P 		107.7
(-3)
P 		236.3
(1.4)
P 		283.2
(3)
P 		176
C 151.2
(-1.3)
P 		178
(-0.4)
P 		122.2
(-2.2)
P 		97.3
(-3)
P 		176.2
(-0.5)
P 		284.2
(3)
P 		187
avr 124.9
(-2.4) 		165.7
(-0.7) 		120.7
(-2.6) 		111.4
(-3) 		193.5
(0.5) 		251.5
(3) 		140
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185082_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12240
Sequence Type Exemplar sequence
Representative Public ID T23B12.1 NCBI
Target Description T23B12.1 /REP_DB=WormBase Gene ID /WP=CE14026 /TR=O17006 /GB=AAB69934.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072781 NCBI Caenorhabditis elegans T23B12.1 (T23B12.1) mRNA, complete cds. 11/11 None
SNAP00000042004 ENSEMBL cdna:SNAP chromosome:CEL140:V:8471642:8472544:1 11/11 None
GENEFINDER00000042012 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8471642:8472544:1 11/11 None
T23B12.1 ENSEMBL cdna:known chromosome:CEL140:V:8471629:8472628:1 gene:T23B12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8471642-8472545(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23B12.1
Entrez Gene 188776 Entrez gene
SwissProt O17006 EMBL-EBI
WormBase CE14026 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69934 Hypothetical protein T23B12.1 [Caenorhabditis elegans] ref|NP_505182.1| T23B12.1 [Caenorhabditis elegans] 1.0E-125
blast CAE58394 Hypothetical protein CBG01523 [Caenorhabditis briggsae] 3.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR001965 EMBL-EBI Zn-finger-like, PHD finger 8.5E-13
Sequence
Target Sequence 
>C. ELEGANS:185082_AT
gcatacatttcgacactcatcaagtttatgaaatctatcgataaaagcactgataaagaa
ttttctgaattggttgccaagacatggtcactttcttccagcacaaacaacttttacaca
gattctttcacaatggattcgggtaatgtttcgaaactcaatccaaatatgctgaatcca
caaaaacgaattgccggaactcaacgattgatgtatgctcctccacagattttaaataaa
tctggatttgtaatagacaagtctggtgcttcatcgtcctctgctcctggtggaatgaag
aaattgaagaaactagtgccagttattgacgattcaatctattgtacaagtgaacagccc
tgtgcagtatgccacggagtctcattagctggaaatcaagttctcgcttgtagaagatgt
cgagattgttaccacatggcatgcagtatccctacagtttcgattgaagaagcatcggaa
cctagtttcaaatattactgcaaaacatgtctcgtttcaaagaaagttatagactccaat
cggtcacgatccccaagtccagcgaaacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATACATTTCGACACTCATCAAGT 60 309 100 Antisense
CAAGACATGGTCACTTTCTTCCAGC 238 185 177 Antisense
TCAACGATTGATGTATGCTCCTCCA 200 631 300 Antisense
GTATGCTCCTCCACAGATTTTAAAT 530 455 312 Antisense
AGACAAGTCTGGTGCTTCATCGTCC 221 73 354 Antisense
TGAACAGCCCTGTGCAGTATGCCAC 623 573 450 Antisense
GTATGCCACGGAGTCTCATTAGCTG 125 453 466 Antisense
GTCGAGATTGTTACCACATGGCATG 135 475 518 Antisense
ACATGGCATGCAGTATCCCTACAGT 4 107 533 Antisense
ATAGACTCCAATCGGTCACGATCCC 554 21 628 Antisense
CGATCCCCAAGTCCAGCGAAACTTG 109 247 646 Antisense
Sequence Source Affymetrix Proprietary Database