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[185081_at]

Description Y73C8C.2 /REP_DB=WormBase Gene ID /WP=CE20358 /TR=Q9TXW7 /GB=AAC69343.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 0      4grp_high_8_8 > 37      6grp_highest_nonorm > 90      6grp_total > 63      4grp_total > 42      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 134.3
(-3)
P 		297.5
(3)
P 		176.2
(-1.5)
P 		176.6
(-1.4)
P 		163
B 123.9
(-3)
P 		350.2
(3)
P 		217.8
(-0.5)
P 		189.8
(-1.3)
P 		226
C 119.5
(-3)
P 		361.6
(3)
P 		171.7
(-1.7)
P 		192.5
(-1.2)
P 		242
avr 125.9
(-3) 		336.4
(3) 		188.6
(-1.2) 		186.3
(-1.3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 157
(1.4)
P 		85.4
(-3)
P 		180.1
(2.8)
P 		184.1
(3)
P 		125.6
(-0.6)
P 		144.4
(0.6)
P 		99
B 115.9
(-0.9)
P 		67.3
(-3)
P 		207.7
(3)
P 		163.1
(1.1)
P 		163.6
(1.1)
P 		138.7
(0.1)
P 		140
C 109.2
(-2.8)
P 		103.2
(-3)
P 		252.7
(3)
P 		235.1
(2.3)
P 		133.8
(-1.8)
P 		114.7
(-2.5)
P 		150
avr 127.4
(-1) 		85.3
(-3) 		213.5
(3) 		194.1
(2.1) 		141
(-0.4) 		132.6
(-0.8) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 48.9
(0.6)
P 		64.6
(3)
P 		46.1
(0.1)
P 		25.9
(-3)
P 		39
B 39.5
(-3)
P 		86.5
(3)
P 		50.5
(-1.6)
P 		40.4
(-2.9)
P 		47
C 39.6
(-2.4)
P 		104
(3)
P 		59.8
(-0.7)
P 		32.5
(-3)
P 		72
avr 42.7
(-1.9) 		85
(3) 		52.1
(-0.8) 		32.9
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 28.9
(-3)
P 		30.4
(-2.5)
P 		39.2
(0.5)
P 		46.7
(3)
P 		37.9
(0)
P 		35.2
(-0.9)
P 		18
B 40.3
(-0.6)
P 		22.4
(-3)
P 		50.4
(0.8)
P 		43.2
(-0.2)
P 		66.5
(3)
P 		51.7
(1)
P 		44
C 40.5
(-1.4)
P 		31.5
(-3)
P 		64.3
(3)
P 		47.3
(-0.1)
P 		43.3
(-0.8)
P 		38.4
(-1.7)
P 		33
avr 36.6
(-0.8) 		28.1
(-3) 		51.3
(3) 		45.7
(1.6) 		49.2
(2.5) 		41.8
(0.5) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185081_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15103
Sequence Type Exemplar sequence
Representative Public ID Y73C8C.2 NCBI
Target Description Y73C8C.2 /REP_DB=WormBase Gene ID /WP=CE20358 /TR=Q9TXW7 /GB=AAC69343.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071454(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071454 NCBI Caenorhabditis elegans Y73C8C.2 (Y73C8C.2) mRNA, complete cds. 11/11 None
SNAP00000003103 ENSEMBL cdna:SNAP chromosome:CEL140:V:3115130:3120054:1 11/11 None
GENEFINDER00000003119 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3115130:3120054:1 11/11 None
Y73C8C.2 ENSEMBL cdna:known chromosome:CEL140:V:3118261:3120054:1 gene:Y73C8C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3118260-3120054(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y73C8C.2
Entrez Gene 190659 Entrez gene
SwissProt Q9TXW7 EMBL-EBI
WormBase CE36051 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69343 Hypothetical protein Y73C8C.2 [Caenorhabditis elegans] ref|NP_503855.2| Y73C8C.2 [Caenorhabditis elegans] 0.0
blast AAC69345 Hypothetical protein Y73C8C.3 [Caenorhabditis elegans] ref|NP_503854.1| Y73C8C.3 [Caenorhabditis elegans] 0.0
blast AAC69348 Hypothetical protein Y73C8C.8 [Caenorhabditis elegans] ref|NP_503853.1| Y73C8C.8 [Caenorhabditis elegans] 0.0
blast AAC04439 Hypothetical protein T22B2.1 [Caenorhabditis elegans] ref|NP_508680.1| T22B2.1 [Caenorhabditis elegans] 0.0
blast CAB05324 Hypothetical protein ZK896.7 [Caenorhabditis elegans] ref|NP_502450.1| ZK896.7 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 5.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 5.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 5.3E-5
Sequence
Target Sequence 
>C. ELEGANS:185081_AT
gatgagctggcattcgtgtgctcttatgatccttcacttactaccactactgctccttct
acttctttaccaacttctactatttccacaaccaaaccaactactaccacatctgtcaga
acaacgacgcagtggaatgctgtaacatctacaactctgcagcaatctacaaaaagaact
gggtgcccggacgggttcacatattttgcgccaacccaaaaatgttacattgtggtcgtc
tatggctacgactcagactaccctcctgtgccgattgatgctccatttttgacaaaagaa
aatcagagatgtcagaagtatggaacaactattgcaacaatacattcatcgagtgtcaat
gattttttcacagatttaatcaaaaagagcttcaacgactctcgattcgcaacaattggg
ctccgcaacactgacctcaaagctactggaggcaaatggcaatggtttgatggaagctca
gctgattttctgaaatttggagattcttttcctaaaactggagattatatcgctcagact
tctgcgcaaggattctgggtaacatatacacacactgctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGAGCTGGCATTCGTGTGCTCTT 517 411 526 Antisense
GCTCTTATGATCCTTCACTTACTAC 322 301 545 Antisense
CCAACTACTACCACATCTGTCAGAA 167 277 622 Antisense
AACATCTACAACTCTGCAGCAATCT 53 139 669 Antisense
GGACGGGTTCACATATTTTGCGCCA 38 525 714 Antisense
GCCGATTGATGCTCCATTTTTGACA 240 285 795 Antisense
GCTTCAACGACTCTCGATTCGCAAC 125 305 914 Antisense
TCGATTCGCAACAATTGGGCTCCGC 517 603 927 Antisense
GCAACACTGACCTCAAAGCTACTGG 470 317 950 Antisense
TATCGCTCAGACTTCTGCGCAAGGA 274 657 1053 Antisense
GTAACATATACACACACTGCTGCCA 60 463 1084 Antisense
Sequence Source Affymetrix Proprietary Database