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[185080_at]

Description F56F10.2 /REP_DB=WormBase Gene ID /WP=CE07293 /TR=Q20892 /GB=AAB36851.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 80      6grp_total > 02      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 315
1 2 3 4 range
A 284.2
(0.5)
P 		137.1
(-2.3)
P 		102
(-3)
P 		417.3
(3)
P 		315
B 280.3
(1.6)
P 		169.7
(-1.8)
P 		131.2
(-3)
P 		327.3
(3)
P 		196
C 243.1
(0)
P 		144.3
(-2.8)
P 		137.1
(-3)
P 		346.6
(3)
P 		210
avr 269.2
(0.6) 		150.4
(-2.3) 		123.4
(-3) 		363.7
(3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 209
(0.7)
P 		261.1
(3)
P 		193.1
(0.1)
P 		249.1
(2.5)
P 		157.3
(-1.5)
P 		122.7
(-3)
P 		138
B 209.8
(2.2)
P 		228.8
(3)
P 		81.5
(-3)
P 		202.4
(1.9)
P 		205.4
(2)
P 		141.8
(-0.5)
P 		147
C 225.9
(1.7)
P 		209.8
(0.6)
P 		158.3
(-3)
P 		244.4
(3)
P 		195.5
(-0.4)
P 		161.6
(-2.8)
P 		86
avr 214.9
(1.8) 		233.2
(3) 		144.3
(-2.8) 		232
(2.9) 		186.1
(-0.1) 		142
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 103.5
(3)
P 		29.8
(-2.8)
P 		26.7
(-3)
P 		61.1
(-0.3)
P 		77
B 89.4
(3)
P 		41.9
(-1.8)
P 		30.4
(-3)
P 		69.7
(1)
P 		59
C 80.5
(3)
P 		41.5
(-3)
P 		47.8
(-2)
P 		58.4
(-0.4)
P 		39
avr 91.1
(3) 		37.7
(-2.7) 		35
(-3) 		63.1
(0) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 38.5
(-2.2)
P 		92.9
(3)
P 		42.1
(-1.8)
P 		63.2
(0.2)
P 		47.5
(-1.3)
P 		29.9
(-3)
P 		63
B 73
(2)
P 		76.2
(2.3)
P 		19.8
(-3)
P 		53.6
(0.2)
P 		83.5
(3)
P 		52.9
(0.1)
P 		64
C 83.7
(3)
P 		64
(0.3)
P 		40.3
(-3)
P 		49.2
(-1.8)
P 		63.3
(0.2)
P 		54.1
(-1.1)
P 		43
avr 65.1
(1.3) 		77.7
(3) 		34.1
(-3) 		55.3
(-0.1) 		64.8
(1.2) 		45.6
(-1.4) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18284
Sequence Type Exemplar sequence
Representative Public ID F56F10.2 NCBI
Target Description F56F10.2 /REP_DB=WormBase Gene ID /WP=CE07293 /TR=Q20892 /GB=AAB36851.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075766 NCBI Caenorhabditis elegans F56F10.2 (F56F10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000010362 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:859947:862430:1 11/11 None
F56F10.2 ENSEMBL cdna:known chromosome:CEL140:X:859947:862437:1 gene:F56F10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010357 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:859946-861416(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F10.2
Entrez Gene 186404 Entrez gene
SwissProt Q20892 EMBL-EBI
WormBase CE31187 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB36851 Hypothetical protein F56F10.2 [Caenorhabditis elegans] ref|NP_508167.2| F56F10.2 [Caenorhabditis elegans] 0.0
blast CAE63610 Hypothetical protein CBG08101 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.2E-5
Sequence
Target Sequence 
>C. ELEGANS:185080_AT
ttcgagctgctcacaacaattcttcattattgcatgccgtacttgttcacacagaaacag
cagtggtatcgtccagctgtgcaaaaagaggaaataattgtagagccgattgctcaggat
tttgaaagccacattctggcagatgtattcaagtatttggatattgatgacctgttgaat
tgtaaattggtatgctggaaatggaacgctacaattggagaaaatgcgtccgaacttgct
agaaccagaactgaccagataagaattttgttcgatgaaggcgaagttgtggtatatcca
attgacgaaaagagatgtccagtcaggcatccgcttccaccattacaggttctccgaaac
cggctgcgccatttaaccacacaatctttatttgtccgtggcttgattccggtggaatcc
ggcccagttttacggttacttttaagcttgacacttcaaccacaacaaatgtattttatc
tggagcaagttttcagctgattccatatttttgtttgaagaactggtaaaacaaaactca
gatactgtaacagactttggactagaggaatgttccccttcacatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGAGCTGCTCACAACAATTCTTC 486 695 196 Antisense
TTATTGCATGCCGTACTTGTTCACA 54 679 222 Antisense
AGTGGTATCGTCCAGCTGTGCAAAA 629 57 257 Antisense
AATGCGTCCGAACTTGCTAGAACCA 347 167 418 Antisense
AGAGATGTCCAGTCAGGCATCCGCT 517 67 506 Antisense
CTTCCACCATTACAGGTTCTCCGAA 446 217 529 Antisense
CACACAATCTTTATTTGTCCGTGGC 9 195 573 Antisense
TGTCCGTGGCTTGATTCCGGTGGAA 64 557 588 Antisense
GGTTACTTTTAAGCTTGACACTTCA 277 499 629 Antisense
GGAGCAAGTTTTCAGCTGATTCCAT 684 519 677 Antisense
TAGAGGAATGTTCCCCTTCACATCT 292 653 758 Antisense
Sequence Source Affymetrix Proprietary Database