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[185079_s_at]

Description Y38H6C.19 /REP_DB=WormBase Gene ID /WP=CE19113 /TR=Q9XX41 /GB=CAA20998.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 33      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 39
(-3)
A 		39.3
(-3)
A 		100.3
(3)
A 		98.8
(2.9)
A 		61
B 14.6
(-3)
A 		98.5
(3)
A 		72.6
(1.1)
A 		73.9
(1.2)
A 		84
C 10.2
(-3)
A 		96.2
(2.5)
A 		55.1
(-0.1)
A 		104.1
(3)
A 		94
avr 21.3
(-3) 		78
(1.8) 		76
(1.6) 		92.3
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 12.1
(-3)
A 		129.2
(1.9)
A 		117.8
(1.4)
P 		155.1
(3)
P 		103
(0.8)
P 		134
(2.1)
P 		143
B 117.1
(1.3)
A 		43.7
(-3)
A 		147.3
(3)
P 		73.1
(-1.3)
P 		111.8
(0.9)
P 		128.3
(1.9)
P 		104
C 49.4
(-3)
A 		101.1
(1.4)
A 		86.9
(0.2)
A 		98.7
(1.2)
P 		105.4
(1.7)
P 		120.5
(3)
P 		71
avr 59.5
(-3) 		91.3
(-0.2) 		117.3
(2.1) 		109
(1.4) 		106.7
(1.2) 		127.6
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 14.2
(-1.1)
A 		8.5
(-3)
A 		26.2
(3)
A 		14.5
(-1)
A 		18
B 4.6
(-3)
A 		24.3
(3)
A 		16.8
(0.7)
A 		15.8
(0.4)
A 		20
C 3.4
(-3)
A 		27.7
(3)
A 		19.2
(0.9)
A 		17.6
(0.5)
A 		24
avr 7.4
(-3) 		20.2
(2.8) 		20.7
(3) 		16
(0.9) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 2.2
(-3)
A 		46
(3)
A 		25.7
(0.2)
P 		39.3
(2.1)
P 		31.1
(1)
P 		32.6
(1.2)
P 		44
B 40.7
(1.7)
A 		14.5
(-3)
A 		35.8
(0.8)
P 		19.4
(-2.1)
P 		45.4
(2.6)
P 		47.8
(3)
P 		33
C 18.3
(-3)
A 		30.8
(0.4)
A 		22.1
(-2)
A 		19.8
(-2.6)
P 		34.1
(1.3)
P 		40.3
(3)
P 		22
avr 20.4
(-3) 		30.4
(0) 		27.9
(-0.7) 		26.2
(-1.2) 		36.9
(2) 		40.2
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185079_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14426
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.19 NCBI
Target Description Y38H6C.19 /REP_DB=WormBase Gene ID /WP=CE19113 /TR=Q9XX41 /GB=CAA20998.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075562(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075562 NCBI Caenorhabditis elegans Y38H6C.19 (Y38H6C.19) mRNA, complete cds. 11/11 None
SNAP00000041332 ENSEMBL cdna:SNAP chromosome:CEL140:V:20550404:20551090:-1 11/11 None
GENEFINDER00000041341 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20550404:20551090:-1 11/11 None
Y38H6C.19 ENSEMBL cdna:known chromosome:CEL140:V:20550404:20551090:-1 gene:Y38H6C.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20550403-20551090(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.19
Entrez Gene 180346 Entrez gene
SwissProt Q9XX41 EMBL-EBI
WormBase CE19113 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20998 Hypothetical protein Y38H6C.19 [Caenorhabditis elegans] ref|NP_507963.1| Y38H6C.19 [Caenorhabditis elegans] 1.0E-116
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 1.0E-58
blast AAD14740 Hypothetical protein Y40B10B.1 [Caenorhabditis elegans] ref|NP_503538.1| Y40B10B.1 [Caenorhabditis elegans] 4.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 2.3E-117
Sequence
Target Sequence 
>C. ELEGANS:185079_S_AT
atgctcttgttgttactcttgcttccatgtctctggacaactataatagctgatcgaatt
gagctccaatctgcacgtgtaaccaactggggggattggcaagaatggaaaaggtgccgc
gatggtcagtttgttcacgccgtcaatctgaagtacgaacaacgtcagcacagtggagac
gatacagctcttaacgcaattgctcttttctgtaagaatattggaggtgatttcaacaaa
caaaatgagatcaaaagtggcgagggggcatggggtgagtggcaaggcgacaacatttgc
ccgaacaacttgttgattattggattcgctctacaatcaaatccggatgaaggaaagggt
gacgatgttggcgccaacaactttgcagcgttttgcggaccaccacacggtgccagaaat
aaggacattgaacttttaggcaatgccatgagttggggtacctggacaggagatcatttt
tgccctgatggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCTCTTGTTGTTACTCTTGCTTC 11 43 13 Antisense
TCTTGCTTCCATGTCTCTGGACAAC 78 619 29 Antisense
TTGAGCTCCAATCTGCACGTGTAAC 691 703 71 Antisense
GTGCCGCGATGGTCAGTTTGTTCAC 346 479 126 Antisense
CAGTTTGTTCACGCCGTCAATCTGA 279 207 139 Antisense
ACAGCTCTTAACGCAATTGCTCTTT 558 107 196 Antisense
GGCATGGGGTGAGTGGCAAGGCGAC 648 535 279 Antisense
GCAAGGCGACAACATTTGCCCGAAC 562 287 294 Antisense
AAAGGGTGACGATGTTGGCGCCAAC 432 117 366 Antisense
CAACTTTGCAGCGTTTTGCGGACCA 430 187 390 Antisense
GGAGATCATTTTTGCCCTGATGGTT 639 517 481 Antisense
Sequence Source Affymetrix Proprietary Database