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[185078_at]

Description K09H11.3 /REP_DB=WormBase Gene ID /WP=CE12052 /TR=O01585 /GB=AAB52263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 4.1
(-3)
A 		7.4
(3)
A 		4.6
(-2.1)
A 		7.3
(2.8)
A 		3
B 4.3
(-3)
A 		9.3
(0.1)
A 		9.5
(0.2)
A 		14
(3)
A 		10
C 4.9
(-2.9)
A 		7.2
(-2.7)
A 		4.3
(-3)
A 		62.9
(3)
A 		59
avr 4.4
(-3) 		8
(-2.1) 		6.1
(-2.6) 		28.1
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 6.6
(-2.6)
A 		2.4
(-3)
A 		7.8
(-2.5)
A 		6.1
(-2.7)
A 		36.2
(0.1)
A 		67.4
(3)
A 		65
B 4.9
(-3)
A 		5.6
(-3)
A 		8.6
(-2.8)
A 		37.1
(-1.4)
A 		27.4
(-1.9)
A 		125.6
(3)
P 		121
C 2.8
(-3)
A 		6.7
(-2.6)
A 		23.6
(-0.8)
A 		5.9
(-2.7)
A 		47.9
(1.8)
A 		59.2
(3)
A 		56
avr 4.8
(-3) 		4.9
(-3) 		13.3
(-2.4) 		16.4
(-2.1) 		37.2
(-0.5) 		84.1
(3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.5
(1.8)
A 		1.6
(3)
A 		1.2
(-1.8)
A 		1.1
(-3)
A 		1
B 1.4
(-3)
A 		2.3
(0.4)
A 		2.2
(0)
A 		3
(3)
A 		2
C 1.6
(-2.9)
A 		2.1
(-2.6)
A 		1.5
(-3)
A 		10.6
(3)
A 		9
avr 1.5
(-3) 		2
(-2.1) 		1.6
(-2.8) 		4.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 1.2
(-2.9)
A 		0.9
(-3)
A 		1.7
(-2.7)
A 		1.5
(-2.8)
A 		10.9
(0.9)
A 		16.4
(3)
A 		16
B 1.7
(-3)
A 		1.9
(-3)
A 		2.1
(-2.9)
A 		9.8
(-1.9)
A 		11.1
(-1.7)
A 		46.8
(3)
P 		45
C 1
(-3)
A 		2
(-2.7)
A 		6
(-1.4)
A 		1.2
(-2.9)
A 		15.5
(1.6)
A 		19.8
(3)
A 		19
avr 1.3
(-3) 		1.6
(-2.9) 		3.3
(-2.5) 		4.2
(-2.3) 		12.5
(-0.5) 		27.7
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11343
Sequence Type Exemplar sequence
Representative Public ID K09H11.3 NCBI
Target Description K09H11.3 /REP_DB=WormBase Gene ID /WP=CE12052 /TR=O01585 /GB=AAB52263.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072102(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072102 NCBI Caenorhabditis elegans K09H11.3 (K09H11.3) mRNA, complete cds. 11/11 None
SNAP00000008370 ENSEMBL cdna:SNAP chromosome:CEL140:V:5720500:5727219:1 9/11 None
GENEFINDER00000008380 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5720500:5724178:1 11/11 None
K09H11.3 ENSEMBL cdna:known chromosome:CEL140:V:5720500:5724675:1 gene:K09H11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071006 1/11 Cross Hyb Matching Probes None
SNAP00000018279 1/11 Cross Hyb Matching Probes None
GENEFINDER00000018280 1/11 Cross Hyb Matching Probes None
Y75B7AL.4 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5720499-5724178(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09H11.3
Entrez Gene 178961 Entrez gene
SwissProt O01585 EMBL-EBI
WormBase CE12052 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504503 K09H11.3 [Caenorhabditis elegans] gb|AAB52263.1| Hypothetical protein K09H11.3 [Caenorhabditis elegans] 0.0
blast AAK68606 Hypothetical protein Y75B7AL.4 [Caenorhabditis elegans] ref|NP_503407.3| Y75B7AL.4 [Caenorhabditis elegans] 0.0
blast CAE62351 Hypothetical protein CBG06428 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000198 EMBL-EBI RhoGAP domain 3.4E-37
Sequence
Target Sequence 
>C. ELEGANS:185078_AT
gggaacctgaagaaccgtcaacacagttcaagcttccgcaattgccgatgccaaagaaaa
tgaaccgatcgggaatctctccgctggcccggcaagcacactcatcaaagtcgacgcttt
cggtaccgaatcgatcaaatcttcgagaaacgaagagcatcgaggaaactccgactgcgt
taagatcggcgccagctcaagcttcctatcaaggatcttcgaatcagatgtcgccaagat
caagtgattatttcgagtttggaaaatacacaaatgcgctgaggtctgcaactgatgagt
ttgcactgccaagcagaaaagcttccgtcgaatctcgtccttcagttgcaattctacgga
ataacaattgcggtttagtgcgatccagagtcaatcattttcaggaaatcgagcacttgc
aacgcgtcgaaacatcgatgagcggtcgattgtcagcaatgtcacaatcatcactccgaa
gcaatgacccgttttcggatcgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAACCTGAAGAACCGTCAACACA 282 493 2645 Antisense
ATGAACCGATCGGGAATCTCTCCGC 539 43 2704 Antisense
GACTGCGTTAAGATCGGCGCCAGCT 445 373 2817 Antisense
CCAGCTCAAGCTTCCTATCAAGGAT 129 273 2836 Antisense
GCGCTGAGGTCTGCAACTGATGAGT 676 285 2920 Antisense
AACTGATGAGTTTGCACTGCCAAGC 39 143 2934 Antisense
AGAAAAGCTTCCGTCGAATCTCGTC 573 71 2959 Antisense
GAATCTCGTCCTTCAGTTGCAATTC 362 329 2974 Antisense
TGCGGTTTAGTGCGATCCAGAGTCA 445 563 3013 Antisense
GAAATCGAGCACTTGCAACGCGTCG 204 361 3049 Antisense
GCAATGACCCGTTTTCGGATCGTTT 555 321 3125 Antisense
Sequence Source Affymetrix Proprietary Database