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[185077_at]

Description Y38H6C.13 /REP_DB=WormBase Gene ID /WP=CE19107 /TR=Q9XX48 /GB=CAA20991.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 02      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 26.3
(-1.6)
A 		25.4
(-1.7)
A 		2.8
(-3)
A 		105.7
(3)
P 		103
B 20
(-3)
A 		22.8
(-2.3)
A 		37.2
(1.5)
A 		42.9
(3)
A 		23
C 25.8
(-3)
A 		27.9
(-2.7)
A 		39
(-1.3)
A 		72.7
(3)
P 		47
avr 24
(-3) 		25.4
(-2.8) 		26.3
(-2.7) 		73.8
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 43.1
(2)
A 		38.7
(1.5)
A 		51.5
(3)
P 		33.7
(0.9)
A 		1.8
(-3)
A 		11.7
(-1.8)
A 		50
B 6.1
(-2.4)
A 		18.9
(-0.8)
A 		5.6
(-2.5)
A 		49.6
(3)
A 		1.3
(-3)
A 		12.1
(-1.7)
A 		48
C 31.8
(2.5)
A 		34.6
(3)
A 		7.2
(-2)
A 		2.9
(-2.7)
A 		15
(-0.5)
A 		1.4
(-3)
A 		33
avr 27
(2.1) 		30.7
(3) 		21.4
(0.7) 		28.7
(2.5) 		6
(-3) 		8.4
(-2.4) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 9.6
(0.6)
A 		5.5
(-1.1)
A 		0.7
(-3)
A 		15.5
(3)
P 		15
B 6.4
(-1.6)
A 		5.6
(-3)
A 		8.6
(2.1)
A 		9.1
(3)
A 		4
C 8.5
(-2.5)
A 		8
(-3)
A 		13.6
(3)
A 		12.3
(1.6)
P 		6
avr 8.2
(-1.2) 		6.4
(-3) 		7.6
(-1.8) 		12.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.9
(0.3)
A 		13.8
(3)
A 		11.2
(1.8)
P 		8.5
(0.6)
A 		0.5
(-3)
A 		2.8
(-2)
A 		13
B 2.1
(-2.2)
A 		6.3
(-0.2)
A 		1.3
(-2.6)
A 		13.1
(3)
A 		0.5
(-3)
A 		4.5
(-1.1)
A 		13
C 11.8
(3)
A 		10.6
(2.4)
A 		1.8
(-2.3)
A 		0.6
(-2.9)
A 		4.8
(-0.7)
A 		0.5
(-3)
A 		11
avr 7.3
(0.9) 		10.2
(3) 		4.8
(-0.9) 		7.4
(1) 		1.9
(-3) 		2.6
(-2.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185077_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13664
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.13 NCBI
Target Description Y38H6C.13 /REP_DB=WormBase Gene ID /WP=CE19107 /TR=Q9XX48 /GB=CAA20991.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075555(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075555 NCBI Caenorhabditis elegans Y38H6C.13 (Y38H6C.13) mRNA, complete cds. 11/11 None
SNAP00000041326 ENSEMBL cdna:SNAP chromosome:CEL140:V:20525926:20533224:1 10/11 None
GENEFINDER00000041343 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20524745:20527492:1 11/11 None
Y38H6C.13 ENSEMBL cdna:known chromosome:CEL140:V:20524745:20527492:1 gene:Y38H6C.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20524744-20527492(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.13
Entrez Gene 189694 Entrez gene
SwissProt Q9XX48 EMBL-EBI
WormBase CE19107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20991 Hypothetical protein Y38H6C.13 [Caenorhabditis elegans] ref|NP_507956.1| Y38H6C.13 [Caenorhabditis elegans] 0.0
blast CAA20990 Hypothetical protein Y38H6C.11 [Caenorhabditis elegans] ref|NP_507954.1| Y38H6C.11 [Caenorhabditis elegans] 8.0E-34
blast CAA20990 Hypothetical protein Y38H6C.11 [Caenorhabditis elegans] ref|NP_507954.1| Y38H6C.11 [Caenorhabditis elegans] 6.0E-32
blast CAA20988 Hypothetical protein Y38H6C.10 [Caenorhabditis elegans] ref|NP_507952.1| Y38H6C.10 [Caenorhabditis elegans] 7.0E-28
blast CAA20988 Hypothetical protein Y38H6C.10 [Caenorhabditis elegans] ref|NP_507952.1| Y38H6C.10 [Caenorhabditis elegans] 7.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.7E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.7E-6
Sequence
Target Sequence 
>C. ELEGANS:185077_AT
taaccacccaagccagctatttctaagaaatcttcgagaggaagactacatcaaaattta
taaattggcgttccaaggtgtgccggaccaaacgattatatcgactgtgccaaagttgta
tgaactccacctaaaatggacgacaccgtttatatcagatcaatatttgtttcgcggttg
ttcaccaggttttgcttggtcacagctcaagcattataaagctcatggttggaagccagt
tggaagcgtctttaaatttagaacaattgtggaaatggacatcgatggaattatgcagct
atatgatgtgcagccgcaattcaggaagttccagcatgttcccgactgggaatacgacat
ttctgagttcccagacaaggaattacaaatgttcgacactgacattccggaaaaagtgtt
catctgcgaacttttgccaacctacattgccggcgtgatttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACCACCCAAGCCAGCTATTTCTA 635 637 648 Antisense
AATTGGCGTTCCAAGGTGTGCCGGA 290 179 710 Antisense
GTGTGCCGGACCAAACGATTATATC 686 481 725 Antisense
GGACGACACCGTTTATATCAGATCA 252 523 785 Antisense
TTTCGCGGTTGTTCACCAGGTTTTG 620 669 817 Antisense
CAGGTTTTGCTTGGTCACAGCTCAA 150 209 833 Antisense
TGTGCAGCCGCAATTCAGGAAGTTC 85 557 954 Antisense
GTTCCAGCATGTTCCCGACTGGGAA 646 439 975 Antisense
GAATACGACATTTCTGAGTTCCCAG 15 327 997 Antisense
TCATCTGCGAACTTTTGCCAACCTA 436 619 1067 Antisense
AACCTACATTGCCGGCGTGATTTGC 346 147 1086 Antisense
Sequence Source Affymetrix Proprietary Database