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[185076_at]

Description F52F10.4 /REP_DB=WormBase Gene ID /WP=CE19884 /TR=Q9UAQ9 /GB=AAC69230.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 60      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 97.3
(1.4)
M 		100.5
(1.5)
A 		126.4
(3)
A 		19.6
(-3)
A 		107
B 93.7
(2.4)
A 		103.9
(3)
P 		72.5
(1.1)
M 		4.1
(-3)
A 		100
C 92.2
(3)
P 		77.6
(1.7)
A 		89.4
(2.8)
P 		24.5
(-3)
A 		68
avr 94.4
(2.9) 		94
(2.8) 		96.1
(3) 		16.1
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 78.6
(0.2)
A 		52
(-2.7)
A 		104.3
(3)
M 		81.4
(0.5)
M 		49.3
(-3)
A 		72
(-0.5)
A 		55
B 44.7
(-1.2)
A 		55.1
(-0.2)
A 		85.1
(3)
P 		80.3
(2.5)
P 		34.3
(-2.3)
A 		28
(-3)
A 		57
C 72.9
(1.2)
A 		69.1
(0.4)
A 		74.5
(1.5)
P 		81.3
(3)
P 		54.7
(-2.7)
A 		53.3
(-3)
P 		28
avr 65.4
(-0.2) 		58.7
(-1.2) 		88
(3) 		81
(2) 		46.1
(-3) 		51.1
(-2.3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 35.4
(3)
M 		21.8
(0.5)
A 		33.1
(2.6)
A 		2.9
(-3)
A 		33
B 29.9
(3)
A 		25.7
(2.1)
P 		16.8
(0.3)
M 		0.9
(-3)
A 		29
C 30.5
(2.8)
P 		22.3
(1)
A 		31.2
(3)
P 		4.1
(-3)
A 		27
avr 31.9
(3) 		23.3
(1.2) 		27
(2) 		2.6
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 14.5
(-3)
A 		18.5
(-0.1)
A 		22.7
(3)
M 		20.7
(1.5)
M 		14.9
(-2.7)
A 		17.5
(-0.8)
A 		8
B 15.5
(-0.2)
A 		18.4
(1.4)
A 		20.7
(2.7)
P 		21.3
(3)
P 		13.9
(-1.1)
A 		10.4
(-3)
A 		11
C 27
(3)
A 		21.1
(-0.3)
A 		19
(-1.5)
P 		16.3
(-3)
P 		17.7
(-2.2)
A 		17.8
(-2.2)
P 		11
avr 19
(1.1) 		19.3
(1.4) 		20.8
(3) 		19.4
(1.5) 		15.5
(-2.7) 		15.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15646
Sequence Type Exemplar sequence
Representative Public ID F52F10.4 NCBI
Target Description F52F10.4 /REP_DB=WormBase Gene ID /WP=CE19884 /TR=Q9UAQ9 /GB=AAC69230.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071041(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071041 NCBI Caenorhabditis elegans F52F10.4 (F52F10.4) mRNA, complete cds. 11/11 None
SNAP00000019919 ENSEMBL cdna:SNAP chromosome:CEL140:V:1542346:1546547:-1 11/11 None
GENEFINDER00000019926 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1542346:1545590:-1 11/11 None
F52F10.4 ENSEMBL cdna:known chromosome:CEL140:V:1542346:1545590:-1 gene:F52F10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1542345-1545590(-) 98.94 100.0
Public Domain and Genome References
Gene Title
Ensembl F52F10.4
Entrez Gene 186125 Entrez gene
SwissProt Q9UAQ9 EMBL-EBI
WormBase CE19884 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69230 Hypothetical protein F52F10.4 [Caenorhabditis elegans] ref|NP_503442.1| F52F10.4 [Caenorhabditis elegans] 0.0
blast CAE62486 Hypothetical protein CBG06590 [Caenorhabditis briggsae] 0.0
blast CAE58792 Hypothetical protein CBG01998 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.0E-10
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 2.0E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503442.1 12 5-23,177-199,251-270,290-312,335-357,404-426,433-455,475-497,504-526,546-568,581-600,615-637
F52F10.4 12 5-23,177-199,251-270,290-312,335-357,404-426,433-455,475-497,504-526,546-568,581-600,615-637
SNAP00000019919 12 181-203,218-240,253-272,292-314,337-359,406-428,435-457,477-499,506-528,548-570,583-602,617-639
GENEFINDER00000019926 12 5-23,177-199,251-270,290-312,335-357,404-426,433-455,475-497,504-526,546-568,581-600,615-637
Sequence
Target Sequence 
>C. ELEGANS:185076_AT
gtgggacttctcacaggataccttctcgccacctatggatctaggaagatccggctgaac
tgggcattagccatcgctggatggataactgcatttgtaatcgctggattttgtcttttc
gcaacttatgattacgataagggagcacactggagcacgttcactagagccacattctac
aatttccaccggctaggatggggagtatttgtgtgctgggttgttggagcgaaccatatg
ggatggggtgggcctatcgataaatttatgtctcatcccatctggcaaccgtttggaaga
ctatcatattgtgcttatattgttcattggatggttttgtattactacttgaatgttgga
ggagttctccattattcatcggcttggcaagtgtttacctacattgcgattccagctaca
cttctctcatatgttcttgcatttttctggagctgtcttttcgaagttccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGGACTTCTCACAGGATACCTTC 251 489 1462 Antisense
CTTCTCGCCACCTATGGATCTAGGA 97 221 1483 Antisense
GGAAGATCCGGCTGAACTGGGCATT 372 529 1505 Antisense
AACTGGGCATTAGCCATCGCTGGAT 638 141 1519 Antisense
ACACTGGAGCACGTTCACTAGAGCC 271 111 1608 Antisense
ATTCTACAATTTCCACCGGCTAGGA 179 11 1635 Antisense
TAAATTTATGTCTCATCCCATCTGG 510 639 1722 Antisense
GGAGTTCTCCATTATTCATCGGCTT 597 517 1822 Antisense
CCTACATTGCGATTCCAGCTACACT 281 269 1859 Antisense
CAGCTACACTTCTCTCATATGTTCT 618 203 1874 Antisense
GGAGCTGTCTTTTCGAAGTTCCAAT 2 519 1910 Antisense
Sequence Source Affymetrix Proprietary Database