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[185075_s_at] 7TM receptor

Description Y45F10B.4 /REP_DB=WormBase Gene ID /WP=CE18403 /TR=O62469 /GB=CAA16355.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 18.5
(-2.6)
A 		43.7
(-0.1)
A 		14.3
(-3)
A 		75.7
(3)
P 		61
B 51.3
(3)
A 		47.4
(2)
A 		26.9
(-3)
A 		46.7
(1.9)
A 		24
C 32.1
(-3)
A 		48.2
(-1.4)
A 		40.1
(-2.2)
M 		93.4
(3)
P 		61
avr 34
(-2.1) 		46.4
(-0.4) 		27.1
(-3) 		71.9
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 2.1
(-3)
A 		14.2
(-1.7)
A 		25.2
(-0.6)
A 		23.2
(-0.8)
A 		13.6
(-1.8)
A 		60
(3)
A 		58
B 8.3
(-3)
A 		46.7
(3)
P 		28.2
(0.1)
A 		29.5
(0.3)
A 		19.4
(-1.3)
A 		14.7
(-2)
A 		38
C 33.9
(0.5)
A 		55.8
(3)
P 		12.3
(-2)
A 		50.1
(2.3)
A 		3.2
(-3)
A 		21.4
(-0.9)
P 		53
avr 14.8
(-2.4) 		38.9
(3) 		21.9
(-0.8) 		34.3
(2) 		12.1
(-3) 		32
(1.5) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.7
(-0.6)
A 		9.5
(1.7)
A 		3.7
(-3)
A 		11.1
(3)
P 		7
B 16.4
(3)
A 		11.7
(0.2)
A 		6.2
(-3)
A 		10
(-0.8)
A 		10
C 10.6
(-3)
A 		13.9
(0.8)
A 		14
(0.9)
M 		15.8
(3)
P 		5
avr 11.2
(1.5) 		11.7
(2.2) 		8
(-3) 		12.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5
(-1.1)
A 		5.5
(-0.8)
A 		5.9
(-0.7)
A 		4.1
(-1.4)
A 		14.6
(3)
A 		14
B 2.9
(-3)
A 		15.6
(3)
P 		6.8
(-1.2)
A 		7.8
(-0.7)
A 		7.9
(-0.6)
A 		5.5
(-1.8)
A 		13
C 12.6
(1.4)
A 		17
(3)
P 		3.1
(-2.2)
A 		10.1
(0.4)
A 		1
(-3)
A 		7.1
(-0.7)
P 		16
avr 5.3
(-2.3) 		12.5
(3) 		5.1
(-2.4) 		7.9
(-0.4) 		4.3
(-3) 		9.1
(0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185075_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8927
Sequence Type Exemplar sequence
Representative Public ID Y45F10B.4 NCBI
Target Description Y45F10B.4 /REP_DB=WormBase Gene ID /WP=CE18403 /TR=O62469 /GB=CAA16355.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069993(10), NM_070215(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069993 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-17) (sru-17) mRNA, complete cds. 10/11 A 
NM_070215 NCBI Caenorhabditis elegans Serpentine Receptor, class U family member (sru-16) (sru-16) mRNA, complete cds. 10/11 None
SNAP00000007856 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13580283:13582081:1 10/11 None
GENEFINDER00000007872 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13580283:13587257:1 10/11 None
SNAP00000015165 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12505668:12509386:1 10/11 None
GENEFINDER00000015174 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12498509:12509982:1 10/11 None
T04A11.10 ENSEMBL cdna:known chromosome:CEL140:IV:12505668:12507352:1 gene:T04A11.10 10/11 None
Y45F10B.4 ENSEMBL cdna:known chromosome:CEL140:IV:13580283:13582081:1 gene:Y45F10B.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13580288-13582087(+) 100.0 100.0
chrIV:12505673-12507358(+) 96.15 96.15
Public Domain and Genome References
Gene Title 7TM receptor

Gene Symbol sru-17
sru-16
Ensembl T04A11.10
Y45F10B.4
Entrez Gene 188048 Entrez gene
189915 Entrez gene
SwissProt O18021 EMBL-EBI
O62469 EMBL-EBI
WormBase CE34592 Wormbase
CE34611 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05613 Hypothetical protein T04A11.10 [Caenorhabditis elegans] ref|NP_502394.2| Serpentine Receptor, class U family member (sru-17) [Caenorhabditis elegans] 0.0
blast CAA16355 Hypothetical protein Y45F10B.4 [Caenorhabditis elegans] ref|NP_502616.2| Serpentine Receptor, class U family member (sru-16) [Caenorhabditis elegans] 0.0
blast CAA16355 Hypothetical protein Y45F10B.4 [Caenorhabditis elegans] ref|NP_502616.2| Serpentine Receptor, class U family member (sru-16) [Caenorhabditis elegans] 1.0E-179
blast CAB05613 Hypothetical protein T04A11.10 [Caenorhabditis elegans] ref|NP_502394.2| Serpentine Receptor, class U family member (sru-17) [Caenorhabditis elegans] 1.0E-179
Protein Domains
Database ID Description E-Value
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 8.9E-90
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.0E-87
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 5.0E-34
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.5E-89
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 9.1E-64
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 1.5E-35
Pfam IPR006096 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, C terminal 5.8E-8
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 2.2E-49
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.5E-65
Pfam IPR003839 EMBL-EBI Protein of unknown function DUF215 3.9E-93
Pfam IPR006096 EMBL-EBI Glu/Leu/Phe/Val dehydrogenase, C terminal 5.8E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502394.2 6 24-46,67-89,113-135,156-178,205-227,254-276
NP_502616.2 6 24-46,67-89,113-135,156-178,205-227,254-276
T04A11.10 6 24-46,67-89,113-135,156-178,205-227,254-276
Y45F10B.4 6 24-46,67-89,113-135,156-178,205-227,254-276
SNAP00000007856 5 24-46,68-90,110-132,152-174,204-226
GENEFINDER00000007872 18 24-46,67-89,113-135,156-178,205-227,254-276,407-429,450-472,496-518,539-561,566-585,592-611,634-656,668-690,713-735,756-778,804-826,857-879
SNAP00000015165 5 24-46,68-90,110-132,152-174,204-226
GENEFINDER00000015174 16 24-46,67-89,117-139,160-178,183-202,250-272,292-310,323-345,375-394,424-446,499-521,542-564,588-610,631-653,711-733,760-782
Sequence
Target Sequence 
>C. ELEGANS:185075_S_AT
ccaatacattatccgctgaatcataagaagatcaacgagaaaatcatccgctacagtatc
ccatttatccatttatatccatttccttttatttctttcatgttacctgcaattggggta
tgcagacagctgagaggaccttatgagttcggttcgctctacattcatttcacggactct
tggcataatgtgataaatgctccattcctagtgctcaattcaatcatttggctgatcatc
tgcctaatcaccaactattttctttatcgaaaaattcgaaatttaaaagtctcagctaga
tgccagttgcacgtaaacaggaacaccaactaccaaaaagcagaagtctctttgacactc
actgccacttcaatgattcttgcatacattacgaatcttgtttttctggtaagagaaatg
aaatatattcaaaataaaaatatgcattttcagggaaactttttaattgatgagcagact
gcaacctattttgcaatctttcgtccgtttggaaatgatttggaaacttgtgttgtgacg
tggatattctatttaactcatccggcttttcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAATACATTATCCGCTGAATCATA 676 275 427 Antisense
ATCATCTGCCTAATCACCAACTATT 4 31 661 Antisense
ATCACCAACTATTTTCTTTATCGAA 355 29 673 Antisense
AGTCTCAGCTAGATGCCAGTTGCAC 404 61 714 Antisense
CAGAAGTCTCTTTGACACTCACTGC 403 205 767 Antisense
TCACTGCCACTTCAATGATTCTTGC 190 627 785 Antisense
ACATTACGAATCTTGTTTTTCTGGT 388 101 812 Antisense
ATGAGCAGACTGCAACCTATTTTGC 682 41 896 Antisense
TTTTGCAATCTTTCGTCCGTTTGGA 144 675 915 Antisense
GTGACGTGGATATTCTATTTAACTC 693 481 961 Antisense
ATTTAACTCATCCGGCTTTTCGAGA 378 15 977 Antisense
Sequence Source Affymetrix Proprietary Database