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[185073_at]

Description K07C11.3 /REP_DB=WormBase Gene ID /WP=CE07346 /TR=Q21267 /GB=AAA96176.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 02      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 793
1 2 3 4 range
A 225.8
(-2.4)
P 		187.2
(-2.7)
P 		149.2
(-3)
P 		928.9
(3)
P 		780
B 194.3
(-2.7)
P 		195.4
(-2.7)
P 		161.4
(-3)
P 		882.3
(3)
P 		721
C 228.2
(-2.7)
P 		243.6
(-2.5)
P 		186.5
(-3)
P 		941.9
(3)
P 		755
avr 216.1
(-2.6) 		208.7
(-2.7) 		165.7
(-3) 		917.7
(3) 		752

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 660
1 2 3 4 5 6 range
A 300.8
(-2.3)
P 		230.8
(-3)
P 		460.1
(-0.6)
P 		419.2
(-1.1)
P 		482.1
(-0.4)
P 		811.5
(3)
P 		581
B 339
(-2.5)
P 		283.6
(-3)
P 		325
(-2.6)
P 		329.3
(-2.5)
P 		504.4
(-0.8)
P 		890.9
(3)
P 		607
C 399.2
(-1.3)
P 		268
(-3)
P 		311.8
(-2.4)
P 		367.7
(-1.7)
P 		577.4
(0.9)
P 		742.7
(3)
P 		475
avr 346.3
(-2.1) 		260.8
(-3) 		365.6
(-1.9) 		372.1
(-1.8) 		521.3
(-0.2) 		815
(3) 		554
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 82.2
(-0.3)
P 		40.6
(-2.9)
P 		39
(-3)
P 		136
(3)
P 		97
B 62
(-2)
P 		48.2
(-2.6)
P 		37.4
(-3)
P 		188
(3)
P 		151
C 75.5
(-2.3)
P 		70
(-2.7)
P 		65
(-3)
P 		158.8
(3)
P 		94
avr 73.2
(-1.6) 		52.9
(-2.7) 		47.1
(-3) 		160.9
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 55.4
(-3)
P 		82.1
(-1.9)
P 		100.2
(-1.1)
P 		106.3
(-0.9)
P 		145.5
(0.8)
P 		197.6
(3)
P 		142
B 118
(-2.1)
P 		94.4
(-2.6)
P 		78.9
(-3)
P 		87.2
(-2.8)
P 		204.9
(-0)
P 		332.2
(3)
P 		253
C 148
(-0.5)
P 		81.8
(-2.7)
P 		79.4
(-2.8)
P 		73.9
(-3)
P 		186.8
(0.9)
P 		248.6
(3)
P 		175
avr 107.1
(-2.3) 		86.1
(-3) 		86.2
(-3) 		89.1
(-2.9) 		179.1
(0.2) 		259.5
(3) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12126
Sequence Type Exemplar sequence
Representative Public ID K07C11.3 NCBI
Target Description K07C11.3 /REP_DB=WormBase Gene ID /WP=CE07346 /TR=Q21267 /GB=AAA96176.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072714(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072714 NCBI Caenorhabditis elegans K07C11.3 (K07C11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000021039 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8209827:8210504:1 10/11 None
K07C11.3 ENSEMBL cdna:known chromosome:CEL140:V:8209826:8210590:1 gene:K07C11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8209827-8210505(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K07C11.3
Entrez Gene 179199 Entrez gene
SwissProt Q21267 EMBL-EBI
WormBase CE29510 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96176 Hypothetical protein K07C11.3 [Caenorhabditis elegans] ref|NP_505115.1| K07C11.3 [Caenorhabditis elegans] 2.0E-87
blast CAE66105 Hypothetical protein CBG11325 [Caenorhabditis briggsae] 2.0E-71
Sequence
Target Sequence 
>C. ELEGANS:185073_AT
tagcagttgttttcacgttcctactctgtctcagttttccacaaagttttgagtcatgta
gctgtatggaatttcaatcagagaaagatggatattgcgcaacttcatggatttccaaag
tgaaagtcgtttcgaaggaaactgatgggcttggattaatgatgtcatatcgattggaac
atttgaaagttatcaaggcaccagaaaacatgactttaccggagacaatgaacactgcaa
cgcaagaaagtgcttgtggatccttggcaaacaacgattctcttttgataacattttgcg
actggcgtgttccattaaaatacattgatgagccaaaactcgagatgaagccgacttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCAGTTGTTTTCACGTTCCTACT 579 651 17 Antisense
TACTCTGTCTCAGTTTTCCACAAAG 451 645 38 Antisense
TATTGCGCAACTTCATGGATTTCCA 195 665 109 Antisense
GGAAACTGATGGGCTTGGATTAATG 77 529 153 Antisense
GAAAACATGACTTTACCGGAGACAA 91 355 220 Antisense
GGAGACAATGAACACTGCAACGCAA 294 519 237 Antisense
AAGTGCTTGTGGATCCTTGGCAAAC 513 157 264 Antisense
GATCCTTGGCAAACAACGATTCTCT 507 415 275 Antisense
TTCTCTTTTGATAACATTTTGCGAC 232 693 294 Antisense
ATTTTGCGACTGGCGTGTTCCATTA 26 15 309 Antisense
AAACTCGAGATGAAGCCGACTTGGA 614 125 352 Antisense
Sequence Source Affymetrix Proprietary Database