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[185072_at]

Description C32B5.13 /REP_DB=WormBase Gene ID /WP=CE08521 /TR=P91110 /GB=AAB37968.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 9
(3)
A 		7.5
(1)
A 		4.6
(-3)
A 		6.9
(0.1)
A 		4
B 23.2
(0.7)
A 		35
(3)
A 		4.4
(-3)
A 		9.7
(-2)
A 		31
C 2.5
(-3)
A 		13.3
(3)
A 		4.5
(-1.9)
A 		5.4
(-1.4)
A 		11
avr 11.6
(0) 		18.6
(3) 		4.5
(-3) 		7.3
(-1.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.4
(1.5)
A 		6.4
(-0.6)
A 		4.1
(-3)
A 		9.8
(3)
A 		8.4
(1.5)
A 		5.8
(-1.2)
A 		6
B 3.9
(-2.8)
A 		6.1
(-1.1)
A 		5.6
(-1.4)
A 		11.3
(3)
A 		10
(2)
A 		3.6
(-3)
A 		8
C 7.9
(-1.4)
A 		20.3
(3)
A 		3.5
(-3)
A 		3.5
(-3)
A 		3.5
(-3)
A 		3.7
(-2.9)
A 		17
avr 6.7
(-0.9) 		10.9
(3) 		4.4
(-3) 		8.2
(0.5) 		7.3
(-0.3) 		4.4
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.3
(3)
A 		1.6
(-1.4)
A 		1.2
(-2.5)
A 		1
(-3)
A 		2
B 7.4
(2.1)
A 		8.6
(3)
A 		1
(-3)
A 		2.1
(-2.1)
A 		8
C 0.8
(-3)
A 		3.8
(3)
A 		1.6
(-1.4)
A 		0.9
(-2.8)
A 		3
avr 3.8
(1.4) 		4.7
(3) 		1.3
(-3) 		1.3
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.6
(-0.4)
A 		2.3
(2.3)
A 		0.9
(-3)
A 		2.5
(3)
A 		2.5
(3)
A 		1.4
(-1.1)
A 		2
B 1.4
(-3)
A 		2
(-1.7)
A 		1.4
(-3)
A 		3
(0.6)
A 		4.1
(3)
A 		1.4
(-3)
A 		3
C 2.9
(-0.6)
A 		6.2
(3)
A 		0.9
(-2.8)
A 		0.7
(-3)
A 		1.1
(-2.6)
A 		1.2
(-2.5)
A 		6
avr 2
(-0.8) 		3.5
(3) 		1.1
(-3) 		2.1
(-0.5) 		2.6
(0.8) 		1.3
(-2.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4925
Sequence Type Exemplar sequence
Representative Public ID C32B5.13 NCBI
Target Description C32B5.13 /REP_DB=WormBase Gene ID /WP=CE08521 /TR=P91110 /GB=AAB37968.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061465 NCBI Caenorhabditis elegans C32B5.13 (C32B5.13) mRNA, complete cds. 11/11 None
SNAP00000042176 ENSEMBL cdna:SNAP chromosome:CEL140:II:961358:961914:-1 11/11 None
GENEFINDER00000042189 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:961132:961914:-1 11/11 None
C32B5.13 ENSEMBL cdna:known chromosome:CEL140:II:961358:961914:-1 gene:C32B5.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:961356-961913(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32B5.13
Entrez Gene 183116 Entrez gene
SwissProt P91110 EMBL-EBI
WormBase CE08521 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493866 C32B5.13 [Caenorhabditis elegans] gb|AAB37968.1| Hypothetical protein C32B5.13 [Caenorhabditis elegans] 3.0E-86
blast NP_493866 C32B5.13 [Caenorhabditis elegans] gb|AAB37968.1| Hypothetical protein C32B5.13 [Caenorhabditis elegans] 6.0E-83
blast AAB71030 Hypothetical protein K02E7.10 [Caenorhabditis elegans] ref|NP_493904.1| K02E7.10 [Caenorhabditis elegans] 9.0E-52
blast AAB71030 Hypothetical protein K02E7.10 [Caenorhabditis elegans] ref|NP_493904.1| K02E7.10 [Caenorhabditis elegans] 2.0E-48
blast NP_493867 C32B5.7 [Caenorhabditis elegans] gb|AAB37963.1| Hypothetical protein C32B5.7 [Caenorhabditis elegans] 4.0E-38
Sequence
Target Sequence 
>C. ELEGANS:185072_AT
gaacagttttgtcgttttccgagcaacagattattgattgtggtaacttcacaagcccat
gtcaggagaatattttaagtcatgaattcattaagaaaaacggagtagtaaccgaagctg
actacccatatgtgggaaaggagaatgaaaaatgtaaatatgacgagaacaaaataaaac
tttggccaactaatatgctacttgtcggaaatctacctgaaacgttgctgaagttattca
tcaaagagcacggacctgggtatttcagaatgaaggccccaccatccttcttcaactaca
aaactggaatctatagccctacccaggaagaatgcgggaaggccactgatgctcgatcgt
tgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAGTTTTGTCGTTTTCCGAGCA 171 349 35 Antisense
GTAACTTCACAAGCCCATGTCAGGA 668 461 77 Antisense
AACTTTGGCCAACTAATATGCTACT 672 91 212 Antisense
ATATGCTACTTGTCGGAAATCTACC 104 21 227 Antisense
GAAATCTACCTGAAACGTTGCTGAA 160 363 242 Antisense
AGAGCACGGACCTGGGTATTTCAGA 396 69 279 Antisense
ATTTCAGAATGAAGGCCCCACCATC 51 17 296 Antisense
AAACTGGAATCTATAGCCCTACCCA 104 127 335 Antisense
ATAGCCCTACCCAGGAAGAATGCGG 16 13 347 Antisense
GAATGCGGGAAGGCCACTGATGCTC 312 331 364 Antisense
GCCACTGATGCTCGATCGTTGACAA 521 279 376 Antisense
Sequence Source Affymetrix Proprietary Database