[Home] | [Total List]

[185071_at]

Description F26D11.2 /REP_DB=WormBase Gene ID /WP=CE17706 /TR=O61965 /GB=AAC17746.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 34      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 10.3
(-3)
A 		94.9
(3)
A 		48.5
(-0.3)
A 		70.4
(1.3)
A 		85
B 21.6
(-2)
A 		36
(-0.7)
A 		10.9
(-3)
A 		75.5
(3)
A 		65
C 32.2
(1.1)
A 		21.3
(-0.6)
A 		44
(3)
A 		6.1
(-3)
A 		38
avr 21.4
(-3) 		50.7
(3) 		34.5
(-0.3) 		50.7
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 984
1 2 3 4 5 6 range
A 75.6
(-2.8)
A 		50.3
(-3)
A 		183.5
(-2.2)
P 		1012.7
(3)
P 		551.9
(0.1)
P 		121.5
(-2.6)
M 		962
B 29.2
(-3)
A 		33.7
(-3)
A 		211.5
(-1.7)
P 		891.6
(3)
P 		493.1
(0.2)
P 		117.9
(-2.4)
P 		862
C 72.1
(-2.9)
A 		59.3
(-3)
A 		263.9
(-1.4)
P 		839.2
(3)
P 		468.5
(0.1)
P 		111.2
(-2.6)
P 		780
avr 59
(-2.9) 		47.8
(-3) 		219.6
(-1.8) 		914.5
(3) 		504.5
(0.2) 		116.9
(-2.5) 		867
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.7
(-3)
A 		20.6
(3)
A 		12.7
(0.2)
A 		10.3
(-0.7)
A 		17
B 6.9
(-1.1)
A 		8.9
(-0.2)
A 		2.5
(-3)
A 		16.1
(3)
A 		14
C 10.7
(1.1)
A 		6.1
(-0.9)
A 		15.3
(3)
A 		1
(-3)
A 		14
avr 7.1
(-3) 		11.9
(3) 		10.2
(0.9) 		9.1
(-0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 13.9
(-3)
A 		17.9
(-2.9)
A 		40
(-2.4)
P 		256.8
(3)
P 		166.5
(0.8)
P 		29.6
(-2.6)
M 		243
B 10.1
(-3)
A 		11.2
(-3)
A 		51.4
(-1.9)
P 		236.2
(3)
P 		200.3
(2)
P 		44
(-2.1)
P 		226
C 26.7
(-2.7)
A 		18.1
(-3)
A 		67.2
(-1)
P 		168.8
(3)
P 		151.6
(2.3)
P 		37.2
(-2.2)
P 		151
avr 16.9
(-3) 		15.7
(-3) 		52.9
(-1.9) 		220.6
(3) 		172.8
(1.6) 		36.9
(-2.4) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185071_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12145
Sequence Type Exemplar sequence
Representative Public ID F26D11.2 NCBI
Target Description F26D11.2 /REP_DB=WormBase Gene ID /WP=CE17706 /TR=O61965 /GB=AAC17746.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072648 NCBI Caenorhabditis elegans F26D11.2 (F26D11.2) mRNA, complete cds. 11/11 None
SNAP00000012540 ENSEMBL cdna:SNAP chromosome:CEL140:V:7962081:7963549:1 11/11 None
GENEFINDER00000012552 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7961922:7963685:1 11/11 None
F26D11.2 ENSEMBL cdna:known chromosome:CEL140:V:7961922:7963549:1 gene:F26D11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7961922-7963550(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26D11.2
Entrez Gene 184973 Entrez gene
SwissProt O61965 EMBL-EBI
WormBase CE17706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17746 Hypothetical protein F26D11.2 [Caenorhabditis elegans] ref|NP_505049.1| F26D11.2 [Caenorhabditis elegans] 0.0
blast AAC17746 Hypothetical protein F26D11.2 [Caenorhabditis elegans] ref|NP_505049.1| F26D11.2 [Caenorhabditis elegans] 1.0E-173
blast CAE64023 Hypothetical protein CBG08618 [Caenorhabditis briggsae] 1.0E-153
blast CAE64023 Hypothetical protein CBG08618 [Caenorhabditis briggsae] 1.0E-151
blast CAE64023 Hypothetical protein CBG08618 [Caenorhabditis briggsae] 1.0E-140
Sequence
Target Sequence 
>C. ELEGANS:185071_AT
gcattgtctcaaaattctgtacttattgaggaagatgataattatccagctgttcgccaa
ccattggagccaactaagatgatgttcatgtcacatagtgagccaaattttctaaggggc
gattatacgattggacgagaaattaaaagatctcccacaaaactgagaaggagatcaaga
ttgacaaaagcccaattagaaacggcaattaaaaatgcagagaaagaagctcggatagcg
gagatggagaaaatcttaaagcgacgaaaagctcaactcaaagaacgtagaagcgcaaga
aaacagcgagaactggcaatgaaaaaaagaagagaatcgagaaaacttagaattacaaaa
attcaagatgatagtagaagtgtgagaagaagcccagttggaagagttacatttaacgaa
aagatgttccaacttctcgaagagtacggtattaaatcattccgagttgaaacagctgac
tacactgttcgtgcttttgctgacccagagaagacccgtttttcatcaataaatctactt
gatgttcccatgtacaacgacgctatccttaaaaaaccagagagacctgcattcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTGTCTCAAAATTCTGTACTTA 528 307 541 Antisense
GATAATTATCCAGCTGTTCGCCAAC 257 423 577 Antisense
GTTCGCCAACCATTGGAGCCAACTA 574 441 592 Antisense
GAGCCAAATTTTCTAAGGGGCGATT 167 379 640 Antisense
AAGATGTTCCAACTTCTCGAAGAGT 543 155 961 Antisense
GACTACACTGTTCGTGCTTTTGCTG 508 373 1018 Antisense
TTCGTGCTTTTGCTGACCCAGAGAA 397 695 1028 Antisense
GACCCAGAGAAGACCCGTTTTTCAT 703 379 1042 Antisense
AAATCTACTTGATGTTCCCATGTAC 590 117 1071 Antisense
TCCCATGTACAACGACGCTATCCTT 304 599 1086 Antisense
AAAACCAGAGAGACCTGCATTCATA 578 131 1113 Antisense
Sequence Source Affymetrix Proprietary Database