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[185070_s_at]

Description C46G7.4B /REP_DB=WormBase Gene ID /WP=CE08781 /TR=Q9TY23 /GB=AAB52878.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 52      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 44      6grp_total > 72      4grp_total > 59      6grp_highest_sub > 04      6grp_cgc > 74      6grp_high1_sub > 03      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1386
1 2 3 4 range
A 985.2
(1)
P 		1428.2
(3)
P 		1388.7
(2.8)
P 		106.2
(-3)
P 		1322
B 983.8
(1.2)
P 		1348.2
(2.9)
P 		1369.2
(3)
P 		90.3
(-3)
P 		1279
C 1039.1
(1.1)
P 		1224.3
(1.9)
P 		1476
(3)
P 		93.3
(-3)
P 		1383
avr 1002.7
(1.1) 		1333.6
(2.6) 		1411.3
(3) 		96.6
(-3) 		1315

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1618
1 2 3 4 5 6 range
A 1119.1
(-3)
P 		2089.2
(3)
P 		1573.8
(-0.2)
P 		1955.9
(2.2)
P 		1763.8
(1)
P 		1225.5
(-2.3)
P 		970
B 1141.7
(-2.2)
P 		1630.6
(1)
P 		1943.5
(3)
P 		1920.6
(2.9)
P 		1478.9
(-0)
P 		1016.2
(-3)
P 		927
C 980.5
(-3)
P 		1711.3
(-0.3)
P 		2598.6
(3)
P 		2055
(1)
P 		1818.5
(0.1)
P 		1118.2
(-2.5)
P 		1618
avr 1080.4
(-3) 		1810.4
(1.6) 		2038.6
(3) 		1977.2
(2.6) 		1687.1
(0.8) 		1120
(-2.8) 		958
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 499
1 2 3 4 range
A 358.7
(2.9)
P 		310
(2.1)
P 		363
(3)
P 		15.5
(-3)
P 		348
B 313.7
(2.6)
P 		333
(3)
P 		317.3
(2.7)
P 		19.2
(-3)
P 		314
C 344
(0.9)
P 		352
(1)
P 		514.4
(3)
P 		15.7
(-3)
P 		499
avr 338.8
(2.1) 		331.7
(2) 		398.2
(3) 		16.8
(-3) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 206.3
(-3)
P 		743
(3)
P 		342.7
(-1.5)
P 		496.1
(0.2)
P 		532.2
(0.6)
P 		298.4
(-2)
P 		537
B 397.2
(-2.5)
P 		542.8
(1.4)
P 		471.9
(-0.5)
P 		508.7
(0.5)
P 		600.9
(3)
P 		378.9
(-3)
P 		222
C 363.4
(-3)
P 		522.2
(0.2)
P 		661.4
(3)
P 		413.3
(-2)
P 		588.4
(1.5)
P 		374.3
(-2.8)
P 		298
avr 322.3
(-3) 		602.7
(3) 		492
(0.6) 		472.7
(0.2) 		573.8
(2.4) 		350.5
(-2.4) 		280
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185070_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10531
Sequence Type Exemplar sequence
Representative Public ID C46G7.4B NCBI
Target Description C46G7.4B /REP_DB=WormBase Gene ID /WP=CE08781 /TR=Q9TY23 /GB=AAB52878.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068507(11), NM_068506(11), NM_068505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068507 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-22) (pqn-22) mRNA, complete cds. 11/11 None
NM_068506 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-22) (pqn-22) mRNA, complete cds. 11/11 None
NM_068505 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-22) (pqn-22) mRNA, complete cds. 11/11 None
SNAP00000030353 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6019961:6023284:-1 11/11 None
GENEFINDER00000030356 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6019961:6033622:-1 11/11 None
C46G7.4b ENSEMBL cdna:known chromosome:CEL140:IV:6019688:6027509:-1 gene:C46G7.4 11/11 None
C46G7.4a ENSEMBL cdna:known chromosome:CEL140:IV:6019961:6034522:-1 gene:C46G7.4 11/11 None
C46G7.4c ENSEMBL cdna:known chromosome:CEL140:IV:6019961:6031530:-1 gene:C46G7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6019966-6027074(-) 100.0 100.0
Public Domain and Genome References
Ensembl C46G7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500908 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-22) [Caenorhabditis elegans] gb|AAB52878.1| Prion-like-(q/n-rich)-domain-bearing protein protein 22, isoform b [Caenorhabditis elegans] 0.0
blast NP_500907 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-22) [Caenorhabditis elegans] gb|AAB52880.1| Prion-like-(q/n-rich)-domain-bearing protein protein 22, isoform a [Caenorhabditis elegans] 0.0
blast CAE64688 Hypothetical protein CBG09470 [Caenorhabditis briggsae] 0.0
blast NP_500906 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-22) [Caenorhabditis elegans] gb|AAB52879.2| Prion-like-(q/n-rich)-domain-bearing protein protein 22, isoform c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185070_S_AT
tacaattattcttcgagcaccatcccatcgcagccagccaaaccatcgttcaaccaggaa
agctatacaactcacacagagagaaacaattcttcgcaaggattcccacaacaaagactt
caaccatccggtggatattcttacgaaaactattccagcagcagaaaggaagagaaccgc
cgtgaagagacctcccgtccagtttctcaactttctcagtattcggaatcccgtaactat
aagagaaattacgaggagaagactgaaactacaacagttccatctcttgcaccagcaacc
aatgtcacctataaagacttatcaaatgctcaatgtgtagatgatgttttcaataagaag
actgaaatgaatgagtctcttccagttggatccgttttcaatactcataataatactgag
ggaggctaccgtgatgcaaatggacatgatgtatcttacaaaagagaaactcaaacatca
gctgatccaggaagagagacagctcttctaaaagaggaagagaaacgagttgttgaaact
ccattggagccaggagtcatctctcgtcacgtcactaccaagtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAATTATTCTTCGAGCACCATCC 95 643 1159 Antisense
ACAATTCTTCGCAAGGATTCCCACA 44 115 1244 Antisense
AGAGAACCGCCGTGAAGAGACCTCC 359 63 1329 Antisense
GTTTCTCAACTTTCTCAGTATTCGG 540 449 1360 Antisense
AACTACAACAGTTCCATCTCTTGCA 53 141 1425 Antisense
CACCAGCAACCAATGTCACCTATAA 352 201 1448 Antisense
GAATGAGTCTCTTCCAGTTGGATCC 300 331 1527 Antisense
GTTGGATCCGTTTTCAATACTCATA 547 435 1543 Antisense
TACTGAGGGAGGCTACCGTGATGCA 17 647 1572 Antisense
ATTGGAGCCAGGAGTCATCTCTCGT 525 3 1701 Antisense
TCTCGTCACGTCACTACCAAGTATT 585 609 1720 Antisense
Sequence Source Affymetrix Proprietary Database