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[185069_s_at]

Description ZK1055.6 /REP_DB=WormBase Gene ID /WP=CE18475 /TR=O76448 /GB=AAC19264.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 07      4grp_high_8_8 > 0      6grp_highest_nonorm > 60      6grp_total > 07      4grp_total > 07      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 280.5
(3)
P 		142.9
(-3)
M 		184.8
(-1.2)
P 		215.2
(0.2)
P 		138
B 259.7
(2.4)
P 		154.7
(-3)
P 		207.7
(-0.3)
P 		271.2
(3)
P 		117
C 222
(0.1)
P 		186.7
(-3)
P 		221.5
(0.1)
P 		254
(3)
P 		67
avr 254.1
(3) 		161.4
(-3) 		204.7
(-0.2) 		246.8
(2.5) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 610.4
(3)
P 		362.5
(-0.7)
P 		291
(-1.8)
P 		390.1
(-0.3)
P 		210.1
(-3)
P 		212.9
(-3)
P 		400
B 529.7
(3)
P 		314.1
(-0.4)
P 		291.3
(-0.7)
P 		283.7
(-0.8)
P 		232.5
(-1.6)
P 		145.4
(-3)
P 		384
C 645.8
(3)
P 		319.7
(-1.2)
P 		389.3
(-0.3)
P 		298.9
(-1.5)
P 		224.6
(-2.4)
P 		180.3
(-3)
P 		466
avr 595.3
(3) 		332.1
(-0.8) 		323.9
(-0.9) 		324.2
(-0.9) 		222.4
(-2.4) 		179.5
(-3) 		416
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 102.1
(3)
P 		31
(-3)
M 		48.3
(-1.5)
P 		31.5
(-3)
P 		71
B 82.8
(3)
P 		38.2
(-3)
P 		48.1
(-1.7)
P 		57.8
(-0.4)
P 		45
C 73.5
(2.4)
P 		53.7
(-1.1)
P 		77.2
(3)
P 		42.8
(-3)
P 		34
avr 86.1
(3) 		41
(-3) 		57.9
(-0.8) 		44
(-2.6) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 112.5
(1.7)
P 		128.9
(3)
P 		63.4
(-2.1)
P 		98.9
(0.7)
P 		63.4
(-2.1)
P 		51.8
(-3)
P 		77
B 184.3
(3)
P 		104.6
(-0.7)
P 		70.7
(-2.2)
P 		75.2
(-2)
P 		94.5
(-1.1)
P 		54.2
(-3)
P 		130
C 239.4
(3)
P 		97.5
(-1.7)
P 		99.1
(-1.7)
P 		60.1
(-3)
P 		72.7
(-2.6)
P 		60.4
(-3)
P 		179
avr 178.7
(3) 		110.3
(-0.3) 		77.7
(-1.9) 		78.1
(-1.9) 		76.9
(-2) 		55.5
(-3) 		123
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185069_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11993
Sequence Type Exemplar sequence
Representative Public ID ZK1055.6 NCBI
Target Description ZK1055.6 /REP_DB=WormBase Gene ID /WP=CE18475 /TR=O76448 /GB=AAC19264.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072277(11), NM_072278(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072277 NCBI Caenorhabditis elegans ZK1055.6b (ZK1055.6) mRNA, complete cds. 11/11 None
NM_072278 NCBI Caenorhabditis elegans ZK1055.6a (ZK1055.6) mRNA, complete cds. 11/11 None
SNAP00000018291 ENSEMBL cdna:SNAP chromosome:CEL140:V:6601849:6605198:-1 11/11 None
GENEFINDER00000018294 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6601849:6605198:-1 11/11 None
ZK1055.6b ENSEMBL cdna:known chromosome:CEL140:V:6601802:6605198:-1 gene:ZK1055.6 11/11 None
ZK1055.6a ENSEMBL cdna:known chromosome:CEL140:V:6601849:6604693:-1 gene:ZK1055.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179050 3 2 NM_072277 185069_s_at (11)
NM_072278 185069_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6601848-6604479(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1055.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL00880 Hypothetical protein ZK1055.6b [Caenorhabditis elegans] ref|NP_504678.1| ZK1055.6b [Caenorhabditis elegans] 0.0
blast AAC19264 Hypothetical protein ZK1055.6a [Caenorhabditis elegans] ref|NP_504679.1| ZK1055.6a [Caenorhabditis elegans] 0.0
blast CAE71913 Hypothetical protein CBG18975 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185069_S_AT
gaactgataccatcacttttacatcaaagtgttccatccaaaaatgcatcagcgttgttg
acagcttcagcagtcaatacttctgtactgccacttttgagtggtgaaacttcaatcttt
ttgaacaatgcttttgttgcaaagagtcacatgaaagatgtgtcaccaggtgaacgattc
acctgttctctaggcgtggacacggccattcgtatcgaatataagccagccaaaaagttc
catgaagaaggcggttacatcacaaaacattcaactcatgccaccgagcagacgattagt
gtaaagaatacaagaagtggaccgcctgtactgttaacaatcaagcatcatgtaccacgt
agcacagatgagaagatacgtgtgaaactgacatctccagttggcattacctctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGATACCATCACTTTTACATC 109 349 1012 Antisense
GCATCAGCGTTGTTGACAGCTTCAG 452 309 1057 Antisense
GCTTCAGCAGTCAATACTTCTGTAC 588 305 1075 Antisense
ACTTCTGTACTGCCACTTTTGAGTG 652 103 1090 Antisense
GTGAACGATTCACCTGTTCTCTAGG 104 483 1181 Antisense
CTGTTCTCTAGGCGTGGACACGGCC 547 201 1194 Antisense
TGGACACGGCCATTCGTATCGAATA 58 549 1208 Antisense
AACTCATGCCACCGAGCAGACGATT 112 139 1284 Antisense
TGGACCGCCTGTACTGTTAACAATC 477 547 1329 Antisense
AAGCATCATGTACCACGTAGCACAG 358 149 1354 Antisense
ATCTCCAGTTGGCATTACCTCTGAT 585 31 1404 Antisense
Sequence Source Affymetrix Proprietary Database