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[185068_at]

Description Y57G11B.1 /REP_DB=WormBase Gene ID /WP=CE16665 /TR=O18223 /GB=CAB05295.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 80      6grp_total > 71      4grp_total > 05      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 69.2
(0.5)
A 		46.2
(-3)
A 		73.2
(1.1)
P 		85.4
(3)
P 		39
B 72.8
(3)
P 		38.8
(-3)
A 		59.9
(0.7)
P 		66.4
(1.9)
A 		34
C 72.5
(-2.1)
P 		58
(-3)
A 		62.3
(-2.7)
A 		157.5
(3)
P 		100
avr 71.5
(-0.4) 		47.7
(-3) 		65.1
(-1.1) 		103.1
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 65.3
(-2.3)
A 		85
(-0.8)
A 		98.3
(0.2)
P 		135.4
(3)
P 		104
(0.6)
P 		55.6
(-3)
A 		80
B 66.7
(-2.3)
P 		107.4
(-0.5)
P 		184.9
(3)
P 		108.9
(-0.4)
P 		145
(1.2)
P 		51.2
(-3)
P 		134
C 58.2
(-2.7)
A 		173.9
(1.3)
P 		62.9
(-2.5)
P 		221.2
(3)
P 		84.5
(-1.8)
P 		49.3
(-3)
P 		172
avr 63.4
(-2.3) 		122.1
(1.1) 		115.4
(0.7) 		155.2
(3) 		111.2
(0.4) 		52
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 25.2
(3)
A 		10
(-3)
A 		19.1
(0.6)
P 		12.5
(-2)
P 		15
B 23.2
(3)
P 		9.6
(-3)
A 		13.9
(-1.1)
P 		14.1
(-1)
A 		14
C 24
(1.4)
P 		16.7
(-3)
A 		21.7
(0)
A 		26.6
(3)
P 		10
avr 24.1
(3) 		12.1
(-3) 		18.2
(0) 		17.7
(-0.2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 12
(-3)
A 		30.2
(1.9)
A 		21.4
(-0.5)
P 		34.3
(3)
P 		31.4
(2.2)
P 		13.5
(-2.6)
A 		22
B 23.2
(-2.4)
P 		35.7
(-0.5)
P 		44.9
(0.9)
P 		28.8
(-1.5)
P 		58.9
(3)
P 		19.1
(-3)
P 		40
C 21.6
(-2.1)
A 		53.1
(3)
P 		16
(-3)
P 		44.5
(1.6)
P 		27.4
(-1.2)
P 		16.5
(-2.9)
P 		37
avr 18.9
(-2.4) 		39.7
(3) 		27.4
(-0.2) 		35.9
(2) 		39.2
(2.9) 		16.4
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185068_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9441
Sequence Type Exemplar sequence
Representative Public ID Y57G11B.1 NCBI
Target Description Y57G11B.1 /REP_DB=WormBase Gene ID /WP=CE16665 /TR=O18223 /GB=CAB05295.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070365 NCBI Caenorhabditis elegans Y57G11B.1 (Y57G11B.1) mRNA, complete cds. 11/11 None
SNAP00000042434 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14549793:14550284:-1 9/11 None
GENEFINDER00000042442 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14549793:14550284:-1 9/11 None
Y57G11B.1 ENSEMBL cdna:known chromosome:CEL140:IV:14549793:14551923:-1 gene:Y57G11B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021636 2/11 Cross Hyb Matching Probes None
GENEFINDER00000021648 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14549798-14551929(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11B.1
Entrez Gene 190365 Entrez gene
SwissProt O18223 EMBL-EBI
WormBase CE16665 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16502 Hypothetical protein Y57G11B.1 [Caenorhabditis elegans] emb|CAB05295.1| Hypothetical protein Y57G11B.1 [Caenorhabditis elegans] ref|NP_502766.1| Y57G11B.1 [Caenorhabditis elegans] 0.0
blast CAB05291 Hypothetical protein T27E7.6 [Caenorhabditis elegans] ref|NP_502764.1| T27E7.6 [Caenorhabditis elegans] 1.0E-95
blast CAB16502 Hypothetical protein Y57G11B.1 [Caenorhabditis elegans] emb|CAB05295.1| Hypothetical protein Y57G11B.1 [Caenorhabditis elegans] ref|NP_502766.1| Y57G11B.1 [Caenorhabditis elegans] 1.0E-61
blast CAA99807 Hypothetical protein C54D10.7 [Caenorhabditis elegans] ref|NP_506120.1| C54D10.7 [Caenorhabditis elegans] 1.0E-51
blast CAB05291 Hypothetical protein T27E7.6 [Caenorhabditis elegans] ref|NP_502764.1| T27E7.6 [Caenorhabditis elegans] 2.0E-25
Sequence
Target Sequence 
>C. ELEGANS:185068_AT
acatctcgtgagtaacttccagcaactttttgagccagtggaagatgtgaagaaattgtt
ggattctgtgaaaattaagatagaactggtcgatggcaaagatccaaaaattgaggctga
acaactatatgatcttgaagaaattcaagctaagaaaagtatatttgagaatcgtatacg
cagacttcgttcaattctgatacactccagttttaccgatcgcaaattacatgaaatttg
ctcgaccactatttccaacattgaaactttaatgaacaaaagcgatatactatcagtttg
ccatcattttcccagagcagtcgaaaaacaagatttgaagaaaatcaagcactacgctga
catggcacggagcctgagcgacacgttttctcaagaactggggaatattattgacacgtt
ttctacatcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCTCGTGAGTAACTTCCAGCAA 489 105 789 Antisense
ACTTCCAGCAACTTTTTGAGCCAGT 422 103 803 Antisense
GAATCGTATACGCAGACTTCGTTCA 535 329 957 Antisense
GACTTCGTTCAATTCTGATACACTC 632 371 971 Antisense
TGATACACTCCAGTTTTACCGATCG 287 565 986 Antisense
GAAATTTGCTCGACCACTATTTCCA 470 363 1021 Antisense
ACTATCAGTTTGCCATCATTTTCCC 19 103 1077 Antisense
CCATCATTTTCCCAGAGCAGTCGAA 706 269 1089 Antisense
GCACTACGCTGACATGGCACGGAGC 216 317 1137 Antisense
AGCCTGAGCGACACGTTTTCTCAAG 615 83 1159 Antisense
TATTGACACGTTTTCTACATCTTCC 676 665 1197 Antisense
Sequence Source Affymetrix Proprietary Database