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[185066_s_at]

Description Y62F5A.1B /REP_DB=WormBase Gene ID /WP=CE24545 /TR=Q9U1W2 /GB=CAB57913.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 94      6grp_total > 78      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 608.3
(3)
P 		404.3
(-1.9)
P 		358.7
(-3)
P 		378.3
(-2.5)
P 		250
B 422.7
(3)
P 		410.6
(1.8)
P 		361.1
(-3)
P 		404
(1.2)
P 		62
C 481.4
(3)
P 		348
(-3)
P 		460.1
(2)
P 		454.2
(1.8)
P 		133
avr 504.1
(3) 		387.6
(-3) 		393.3
(-2.7) 		412.2
(-1.7) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 858
1 2 3 4 5 6 range
A 486.3
(-0)
P 		389.3
(-1.3)
P 		252.2
(-3)
P 		347.8
(-1.8)
P 		587.2
(1.3)
P 		722.8
(3)
P 		471
B 523.7
(0.5)
P 		231.5
(-3)
P 		304.9
(-2.1)
P 		345.8
(-1.6)
P 		561.4
(1)
P 		730.4
(3)
P 		499
C 382
(-2.7)
P 		368.2
(-2.8)
P 		338.5
(-3)
P 		546.8
(-1.3)
P 		611.7
(-0.8)
P 		1089.2
(3)
P 		751
avr 464
(-1.2) 		329.7
(-2.7) 		298.5
(-3) 		413.5
(-1.7) 		586.8
(0.2) 		847.5
(3) 		549
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 221.5
(3)
P 		87.8
(-1.8)
P 		93.8
(-1.6)
P 		55.4
(-3)
P 		166
B 134.8
(3)
P 		101.4
(-0.9)
P 		83.7
(-3)
P 		86.1
(-2.7)
P 		51
C 159.4
(2.9)
P 		100.1
(-1.3)
P 		160.4
(3)
P 		76.6
(-3)
P 		84
avr 171.9
(3) 		96.4
(-1.6) 		112.6
(-0.6) 		72.7
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 89.6
(-1.3)
P 		138.5
(1.1)
P 		54.9
(-3)
P 		88.2
(-1.4)
P 		177.2
(3)
P 		176
(2.9)
P 		122
B 182.2
(0.3)
P 		77.1
(-2.9)
P 		74
(-3)
P 		91.6
(-2.5)
P 		228.1
(1.7)
P 		272.4
(3)
P 		198
C 141.6
(-1.8)
P 		112.4
(-2.4)
P 		86.1
(-3)
P 		110
(-2.5)
P 		197.9
(-0.6)
P 		364.6
(3)
P 		279
avr 137.8
(-1) 		109.3
(-1.9) 		71.7
(-3) 		96.6
(-2.3) 		201.1
(0.9) 		271
(3) 		199
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185066_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2788
Sequence Type Exemplar sequence
Representative Public ID Y62F5A.1B NCBI
Target Description Y62F5A.1B /REP_DB=WormBase Gene ID /WP=CE24545 /TR=Q9U1W2 /GB=CAB57913.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064063(11), NM_064062(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064063 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-8) (mdt-8) mRNA, complete cds. 11/11 A 
NM_064062 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-8) (mdt-8) mRNA, complete cds. 11/11 A 
GENEFINDER00000004785 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11531178:11534382:-1 11/11 None
Y62F5A.1a ENSEMBL cdna:known chromosome:CEL140:II:11527146:11533719:-1 gene:Y62F5A.1 11/11 A 
Y62F5A.1b ENSEMBL cdna:known chromosome:CEL140:II:11527163:11533719:-1 gene:Y62F5A.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004779 7/11 Cross Hyb Matching Probes None
SNAP00000004780 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11531345-11533716(-) 98.43 98.43
Public Domain and Genome References
Ensembl Y62F5A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB57912 Hypothetical protein Y62F5A.1a [Caenorhabditis elegans] ref|NP_496464.2| MeDiaTor family member (mdt-8) [Caenorhabditis elegans] 1.0E-138
blast CAB57913 Hypothetical protein Y62F5A.1b [Caenorhabditis elegans] ref|NP_496463.2| MeDiaTor family member (mdt-8) [Caenorhabditis elegans] 1.0E-132
blast CAB57913 Hypothetical protein Y62F5A.1b [Caenorhabditis elegans] ref|NP_496463.2| MeDiaTor family member (mdt-8) [Caenorhabditis elegans] 1.0E-130
blast CAB57912 Hypothetical protein Y62F5A.1a [Caenorhabditis elegans] ref|NP_496464.2| MeDiaTor family member (mdt-8) [Caenorhabditis elegans] 1.0E-130
Sequence
Target Sequence 
>C. ELEGANS:185066_S_AT
gaatcacgctctagttccagaatatttgagaacaaaaccgaatccagaaatggaaaacga
agaaggaatgcttgacggcgagagaagtgcgaagagtgcggatctggtggtcagacaaat
tgccgcgtacaacaaaaatatcgaaggattgattaatcatttgaacagtgttgataggat
gcacacggaagctgccattgaaaaaccaacatacaaccgagacgagacggcgaaaatcgt
aaaatcaatattaactggagaaggaatccgatctcaacgaacaatggctccagctcctcc
atcatcagccccaatgacgactgcaccaagttcaacaggaccatcgtcttcccagccgat
cagtggaaatcagccagaatatcaaggatcacagcttcgacagcaactcagtggaggtca
accacagacatcacaggctcatttgccaatgtattcacatcatcaacaaccacaatactc
acatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCACGCTCTAGTTCCAGAATAT 401 327 372 Antisense
GAAGAGTGCGGATCTGGTGGTCAGA 298 339 462 Antisense
GTCAGACAAATTGCCGCGTACAACA 649 461 481 Antisense
GGATGCACACGGAAGCTGCCATTGA 350 511 548 Antisense
GATCTCAACGAACAATGGCTCCAGC 410 419 641 Antisense
CCCAATGACGACTGCACCAAGTTCA 340 257 681 Antisense
AAGTTCAACAGGACCATCGTCTTCC 329 157 699 Antisense
GTCTTCCCAGCCGATCAGTGGAAAT 581 467 717 Antisense
GGATCACAGCTTCGACAGCAACTCA 478 511 757 Antisense
AACCACAGACATCACAGGCTCATTT 194 149 791 Antisense
TCAACAACCACAATACTCACATCAA 84 631 834 Antisense
Sequence Source Affymetrix Proprietary Database