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[185065_at]

Description F26D11.6 /REP_DB=WormBase Gene ID /WP=CE17710 /TR=O61963 /GB=AAC17751.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 26      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 2.4
(-3)
A 		30.9
(3)
A 		3.4
(-2.8)
A 		28.9
(2.6)
A 		29
B 3.3
(-3)
A 		12.7
(3)
A 		4.6
(-2.2)
A 		12.6
(2.9)
A 		9
C 1.3
(-3)
A 		2.9
(-2.5)
A 		3
(-2.5)
A 		21.3
(3)
A 		20
avr 2.3
(-3) 		15.5
(1.3) 		3.7
(-2.5) 		20.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 48.3
(3)
A 		36.7
(1.5)
A 		3.8
(-2.8)
A 		8.2
(-2.2)
A 		4.2
(-2.7)
A 		2.1
(-3)
A 		46
B 26.1
(1.8)
A 		10.6
(-1.2)
A 		5.5
(-2.2)
A 		2
(-2.8)
A 		32.4
(3)
A 		1.2
(-3)
A 		31
C 5.7
(-0.4)
A 		3.3
(-3)
A 		5
(-1.2)
A 		5.6
(-0.5)
A 		3.9
(-2.4)
A 		8.9
(3)
A 		6
avr 26.7
(3) 		16.9
(0.4) 		4.8
(-2.8) 		5.3
(-2.7) 		13.5
(-0.5) 		4.1
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.9
(-3)
A 		6.7
(3)
A 		0.9
(-3)
A 		4.2
(0.4)
A 		6
B 1.1
(-3)
A 		3.1
(3)
A 		1.1
(-3)
A 		2.7
(1.8)
A 		2
C 0.4
(-3)
A 		0.8
(-2.3)
A 		1
(-1.9)
A 		3.6
(3)
A 		3
avr 0.8
(-3) 		3.5
(3) 		1
(-2.6) 		3.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.9
(1)
A 		13
(3)
A 		0.8
(-2.9)
A 		2.1
(-2.2)
A 		1.3
(-2.6)
A 		0.5
(-3)
A 		13
B 9.1
(1.1)
A 		3.5
(-1.6)
A 		1.3
(-2.6)
A 		0.5
(-3)
A 		13.2
(3)
A 		0.5
(-3)
A 		13
C 2.1
(0.3)
A 		1
(-3)
A 		1.3
(-2.1)
A 		1.1
(-2.7)
A 		1.3
(-2.1)
A 		3
(3)
A 		2
avr 6.7
(3) 		5.8
(2) 		1.1
(-3) 		1.2
(-2.9) 		5.3
(1.5) 		1.3
(-2.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185065_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11903
Sequence Type Exemplar sequence
Representative Public ID F26D11.6 NCBI
Target Description F26D11.6 /REP_DB=WormBase Gene ID /WP=CE17710 /TR=O61963 /GB=AAC17751.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072646 NCBI Caenorhabditis elegans F26D11.6 (F26D11.6) mRNA, complete cds. 11/11 None
SNAP00000012537 ENSEMBL cdna:SNAP chromosome:CEL140:V:7955945:7957897:-1 11/11 None
GENEFINDER00000012553 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7955945:7957243:-1 11/11 None
F26D11.6 ENSEMBL cdna:known chromosome:CEL140:V:7955945:7959147:-1 gene:F26D11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7955945-7959148(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26D11.6
Entrez Gene 184977 Entrez gene
SwissProt O61963 EMBL-EBI
WormBase CE17710 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17751 Hypothetical protein F26D11.6 [Caenorhabditis elegans] ref|NP_505047.1| F26D11.6 [Caenorhabditis elegans] 0.0
blast AAC17751 Hypothetical protein F26D11.6 [Caenorhabditis elegans] ref|NP_505047.1| F26D11.6 [Caenorhabditis elegans] 1.0E-171
blast AAC17751 Hypothetical protein F26D11.6 [Caenorhabditis elegans] ref|NP_505047.1| F26D11.6 [Caenorhabditis elegans] 1.0E-129
blast CAE64026 Hypothetical protein CBG08621 [Caenorhabditis briggsae] 8.0E-33
blast CAE64027 Hypothetical protein CBG08622 [Caenorhabditis briggsae] 2.0E-24
blast CAE64027 Hypothetical protein CBG08622 [Caenorhabditis briggsae] 2.0E-23
blast CAA83220 Hypothetical protein B0284.1 [Caenorhabditis elegans] ref|NP_497882.1| B0284.1 [Caenorhabditis elegans] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:185065_AT
tcaacgcactggaaattgatcgcgaaaaggaagaaacaattgaaattcaaaaaaatcttg
ttctgaacaatatgattcttaaatacaaaactgatgatcaaataattcttcattctagtg
agaaggatcgagcccagcgtcaatgtttgctcgacgtgaaatcgttgactgaaaacggaa
tgaaagttatcaattctattggaaaattgagagatgccgctagcggaataaggaaaggaa
gaagagcacccgagaaaaacttcaatatgtgtaaagaatgttacaaagatgcaacaaatg
ccacaaatgcactcaatgagtcggctgaatcaattattcaattttcggaattcacttcag
aaaatctcaaaaccattcaagaagttgctcgaaaaatcaagactacttcttatgatctga
gaaatgaaatcggaaaattccaagcgtcaatctctgataatccaattgaaaactcttctg
taattattatggaagtgaagacaatcactgatactttgagtacgcagataatctcgttac
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACGCACTGGAAATTGATCGCGA 700 629 1040 Antisense
AGTGAGAAGGATCGAGCCCAGCGTC 274 59 1156 Antisense
GAGCCCAGCGTCAATGTTTGCTCGA 658 385 1169 Antisense
GTTTGCTCGACGTGAAATCGTTGAC 344 437 1184 Antisense
GAAAATTGAGAGATGCCGCTAGCGG 642 351 1241 Antisense
AAGAGCACCCGAGAAAAACTTCAAT 10 123 1281 Antisense
GCACTCAATGAGTCGGCTGAATCAA 687 313 1348 Antisense
TCAAGACTACTTCTTATGATCTGAG 27 633 1436 Antisense
AAAATTCCAAGCGTCAATCTCTGAT 482 133 1473 Antisense
GACAATCACTGATACTTTGAGTACG 512 363 1539 Antisense
GAGTACGCAGATAATCTCGTTACCA 479 399 1557 Antisense
Sequence Source Affymetrix Proprietary Database