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[185064_at]

Description C17H11.2 /REP_DB=WormBase Gene ID /WP=CE27703 /TR=P91063 /GB=AAB37983.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 90      6grp_total > 26      4grp_total > 55      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 227.8
(3)
P 		145.3
(-2.1)
P 		159.1
(-1.3)
P 		131.2
(-3)
P 		97
B 227.7
(3)
P 		159.9
(-3)
P 		164
(-2.6)
P 		211.2
(1.5)
P 		68
C 209.7
(2.7)
P 		127.4
(-3)
P 		213.5
(3)
P 		127.9
(-3)
P 		86
avr 221.7
(3) 		144.2
(-3) 		178.9
(-0.3) 		156.8
(-2) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 230
(3)
P 		184.7
(1.1)
P 		148.8
(-0.4)
P 		139.4
(-0.8)
P 		87.3
(-3)
P 		130.8
(-1.2)
P 		143
B 204.3
(3)
P 		174.8
(1.5)
P 		141.7
(-0.1)
P 		150.7
(0.3)
P 		83.1
(-3)
P 		153.3
(0.5)
P 		121
C 226.4
(3)
P 		212
(2.4)
P 		74.7
(-3)
P 		77.5
(-2.9)
P 		123.2
(-1.1)
P 		169.9
(0.8)
P 		152
avr 220.2
(3) 		190.5
(1.5) 		121.7
(-1.8) 		122.5
(-1.8) 		97.9
(-3) 		151.3
(-0.4) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 82.9
(3)
P 		31.5
(-1.8)
P 		41.6
(-0.9)
P 		19.2
(-3)
P 		64
B 72.6
(3)
P 		39.5
(-2.7)
P 		38
(-3)
P 		45
(-1.8)
P 		35
C 69.4
(2.4)
P 		36.6
(-1.3)
P 		74.4
(3)
P 		21.6
(-3)
P 		53
avr 75
(3) 		35.9
(-2.1) 		51.3
(-0.1) 		28.6
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 42.4
(-0.6)
P 		65.7
(3)
P 		32.4
(-2.1)
P 		35.4
(-1.6)
P 		26.4
(-3)
P 		31.8
(-2.2)
P 		39
B 71.1
(3)
P 		58.2
(0.9)
P 		34.4
(-2.9)
P 		39.9
(-2)
P 		33.8
(-3)
P 		57.2
(0.8)
P 		37
C 83.9
(3)
P 		64.7
(1.3)
P 		19
(-2.7)
P 		15.6
(-3)
P 		39.9
(-0.9)
P 		56.9
(0.6)
P 		68
avr 65.8
(3) 		62.9
(2.5) 		28.6
(-3) 		30.3
(-2.7) 		33.4
(-2.2) 		48.6
(0.2) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16082
Sequence Type Exemplar sequence
Representative Public ID C17H11.2 NCBI
Target Description C17H11.2 /REP_DB=WormBase Gene ID /WP=CE27703 /TR=P91063 /GB=AAB37983.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076977(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076977 NCBI Caenorhabditis elegans C17H11.2 (C17H11.2) mRNA, complete cds. 11/11 None
SNAP00000009206 ENSEMBL cdna:SNAP chromosome:CEL140:X:8169880:8172421:1 11/11 None
GENEFINDER00000009233 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8169880:8172421:1 11/11 None
C17H11.2 ENSEMBL cdna:known chromosome:CEL140:X:8169869:8172807:1 gene:C17H11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8169878-8172420(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H11.2
Entrez Gene 181074 Entrez gene
SwissProt P91063 EMBL-EBI
WormBase CE27703 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37983 Hypothetical protein C17H11.2 [Caenorhabditis elegans] ref|NP_509378.1| C17H11.2 [Caenorhabditis elegans] 0.0
blast CAE74853 Hypothetical protein CBG22703 [Caenorhabditis briggsae] 3.0E-17
Sequence
Target Sequence 
>C. ELEGANS:185064_AT
ggattggattgcaccttgacgagcgtactgcggatgagccattgacggagcaagatcgac
aaattcacaaagaacggttctacgagtatgttaaatgtcgaaagaacatgctcgtgagac
atgttcgtaatcaccagcaaaagaagctgatgaaagctcagattgataatgtgtgtaata
tacttcgcgaacgaagtatcatcgaactcgacattattgagtcccgcttttacatggatc
gtcatctgagaactccagctccactcctgcaagaaaatggttttttgattaacaacaata
ggcgtagtaatgagactcagcgaacacaaaatgaaaattttctttcaaagtcgaatggag
tagcagctcaaaatgagcatcagcctgtttctcgtagtgatgttcaaagagtttttggag
ttggtgtgtgcaccaaccaatcgaataagccatgtgctgatgcggcaggagaagccctat
tgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATTGGATTGCACCTTGACGAGCG 660 507 1718 Antisense
GACGAGCGTACTGCGGATGAGCCAT 404 379 1735 Antisense
GAGACATGTTCGTAATCACCAGCAA 372 393 1833 Antisense
GAACTCGACATTATTGAGTCCCGCT 570 349 1921 Antisense
GAGTCCCGCTTTTACATGGATCGTC 50 401 1936 Antisense
GATCGTCATCTGAGAACTCCAGCTC 144 419 1954 Antisense
CCAGCTCCACTCCTGCAAGAAAATG 238 273 1972 Antisense
AATGAGCATCAGCCTGTTTCTCGTA 348 165 2089 Antisense
AGCCTGTTTCTCGTAGTGATGTTCA 697 83 2099 Antisense
GTGTGTGCACCAACCAATCGAATAA 516 487 2141 Antisense
GATGCGGCAGGAGAAGCCCTATTGG 570 413 2176 Antisense
Sequence Source Affymetrix Proprietary Database