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[185063_at]

Description Y38H6C.11 /REP_DB=WormBase Gene ID /WP=CE19105 /TR=Q9XX49 /GB=CAA20990.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 06      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 50      6grp_total > 14      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 564.1
(3)
P 		370.7
(-1.7)
P 		316.8
(-3)
P 		366.6
(-1.8)
P 		247
B 539.3
(3)
P 		291.4
(-3)
P 		322.6
(-2.2)
P 		368.9
(-1.1)
P 		248
C 558.3
(3)
P 		371.4
(-2.1)
P 		340.2
(-3)
P 		351.7
(-2.7)
P 		218
avr 553.9
(3) 		344.5
(-2.5) 		326.5
(-3) 		362.4
(-2.1) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 594.6
(3)
P 		548.9
(2.2)
P 		390.5
(-0.6)
P 		409.9
(-0.3)
P 		317.6
(-1.9)
P 		253.9
(-3)
P 		341
B 745
(3)
P 		518
(0.2)
P 		489.5
(-0.2)
P 		402.5
(-1.3)
P 		350.9
(-1.9)
P 		266.1
(-3)
P 		479
C 690.4
(3)
P 		556.8
(1.1)
P 		483.8
(0.1)
P 		483
(0.1)
P 		258.8
(-3)
P 		296.9
(-2.5)
P 		432
avr 676.7
(3) 		541.2
(1) 		454.6
(-0.3) 		431.8
(-0.6) 		309.1
(-2.5) 		272.3
(-3) 		404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 205.4
(3)
P 		80.5
(-1.9)
P 		82.8
(-1.8)
P 		53.7
(-3)
P 		152
B 172
(3)
P 		72
(-3)
P 		74.8
(-2.8)
P 		78.6
(-2.6)
P 		100
C 184.8
(3)
P 		106.8
(-0.7)
P 		118.6
(-0.2)
P 		59.3
(-3)
P 		126
avr 187.4
(3) 		86.4
(-1.9) 		92.1
(-1.6) 		63.9
(-3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 109.6
(-0.9)
P 		195.2
(3)
P 		85.1
(-2)
P 		104
(-1.1)
P 		95.8
(-1.5)
P 		61.8
(-3)
P 		133
B 259.2
(3)
P 		172.4
(-0.3)
P 		118.9
(-2.3)
P 		106.6
(-2.7)
P 		142.6
(-1.4)
P 		99.2
(-3)
P 		160
C 255.9
(3)
P 		169.9
(0)
P 		123.1
(-1.6)
P 		97.1
(-2.5)
P 		83.8
(-3)
P 		99.4
(-2.5)
P 		172
avr 208.2
(3) 		179.2
(1.6) 		109
(-1.9) 		102.6
(-2.2) 		107.4
(-2) 		86.8
(-3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13229
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.11 NCBI
Target Description Y38H6C.11 /REP_DB=WormBase Gene ID /WP=CE19105 /TR=Q9XX49 /GB=CAA20990.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075553(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075553 NCBI Caenorhabditis elegans Y38H6C.11 (Y38H6C.11) mRNA, complete cds. 11/11 None
SNAP00000041324 ENSEMBL cdna:SNAP chromosome:CEL140:V:20521277:20522512:1 11/11 None
GENEFINDER00000041338 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20520672:20522512:1 11/11 None
Y38H6C.11 ENSEMBL cdna:known chromosome:CEL140:V:20520672:20522512:1 gene:Y38H6C.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20520671-20522512(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38H6C.11
Entrez Gene 189692 Entrez gene
SwissProt Q9XX49 EMBL-EBI
WormBase CE19105 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20990 Hypothetical protein Y38H6C.11 [Caenorhabditis elegans] ref|NP_507954.1| Y38H6C.11 [Caenorhabditis elegans] 0.0
blast CAA20990 Hypothetical protein Y38H6C.11 [Caenorhabditis elegans] ref|NP_507954.1| Y38H6C.11 [Caenorhabditis elegans] 1.0E-164
blast CAA20988 Hypothetical protein Y38H6C.10 [Caenorhabditis elegans] ref|NP_507952.1| Y38H6C.10 [Caenorhabditis elegans] 7.0E-53
blast CAA20988 Hypothetical protein Y38H6C.10 [Caenorhabditis elegans] ref|NP_507952.1| Y38H6C.10 [Caenorhabditis elegans] 3.0E-42
blast CAA20989 Hypothetical protein Y38H6C.9 [Caenorhabditis elegans] ref|NP_507953.1| Y38H6C.9 [Caenorhabditis elegans] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.4E-8
Sequence
Target Sequence 
>C. ELEGANS:185063_AT
tcaaaagctcctaagccgcttcgaaatggaatacctagaaaaaatcacaatgaaatcgct
gagtgggaaggtttttgacaaactgaaaattaccgatcatttcaagagagctaaatcctt
ggatcttcacgccaagaagaatccgagggggtacacgcctggggtagatcaaactgtcgt
agtggactatgccatgctgagccacgtggagaaatacatgctcacagtgcatcagctggt
accggaagatgcttggaaagtgatcaagaacttccgctcgagacccaacctacccattgg
ctcgtttttcaacattgaggttgctgtaatcattgatcacttgcaagttttgcgccaatt
cgatgttcagccaaagcatcagcctcctacaattgccgcattacaattgagctacccagc
ctacacttatcacgtgcagttcttcgatgtagaggactccaacaatattctcgttgtctc
aatcagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAAGCTCCTAAGCCGCTTCGAA 508 629 549 Antisense
GCTAAATCCTTGGATCTTCACGCCA 699 301 658 Antisense
CTATGCCATGCTGAGCCACGTGGAG 621 221 735 Antisense
GCTCACAGTGCATCAGCTGGTACCG 384 301 768 Antisense
AGTGATCAAGAACTTCCGCTCGAGA 560 57 807 Antisense
ACCCATTGGCTCGTTTTTCAACATT 444 89 840 Antisense
TTTGCGCCAATTCGATGTTCAGCCA 16 669 897 Antisense
CAAAGCATCAGCCTCCTACAATTGC 541 191 920 Antisense
CGCATTACAATTGAGCTACCCAGCC 301 253 945 Antisense
CCAGCCTACACTTATCACGTGCAGT 591 273 964 Antisense
ATATTCTCGTTGTCTCAATCAGCAT 433 19 1013 Antisense
Sequence Source Affymetrix Proprietary Database