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[185062_at]

Description W09G12.3 /REP_DB=WormBase Gene ID /WP=CE18342 /TR=O45202 /GB=AAC04449.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 6.1
(-3)
A 		14.4
(-2.4)
A 		37.3
(-0.8)
A 		91.8
(3)
A 		86
B 24.8
(0.1)
A 		40
(2.3)
A 		45
(3)
A 		2.6
(-3)
A 		42
C 23.7
(-1.5)
A 		30.9
(-0.5)
A 		13.6
(-3)
A 		55.3
(3)
A 		42
avr 18.2
(-3) 		28.4
(-1.1) 		32
(-0.4) 		49.9
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 5.8
(-2.6)
A 		25.2
(0.4)
A 		42.6
(3)
A 		38.4
(2.4)
A 		3.2
(-3)
A 		13.2
(-1.5)
A 		39
B 7.6
(-3)
A 		25.1
(0.8)
A 		23.5
(0.5)
A 		35.1
(3)
A 		24.3
(0.6)
A 		17.4
(-0.9)
A 		28
C 25.8
(-2.6)
A 		40
(1.3)
A 		46.3
(3)
A 		24.3
(-3)
A 		24.3
(-3)
A 		41.5
(1.7)
P 		22
avr 13.1
(-3) 		30.1
(1.2) 		37.5
(3) 		32.6
(1.8) 		17.3
(-2) 		24
(-0.3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.2
(-3)
A 		3.1
(-2.5)
A 		9.8
(1.1)
A 		13.4
(3)
A 		11
B 7.9
(1.5)
A 		9.9
(2.7)
A 		10.4
(3)
A 		0.5
(-3)
A 		10
C 7.8
(1)
A 		8.9
(2.5)
A 		4.8
(-3)
A 		9.3
(3)
A 		5
avr 6
(-3) 		7.3
(0.4) 		8.3
(3) 		7.7
(1.4) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		9
(2.5)
A 		9.3
(2.7)
A 		9.7
(3)
A 		1
(-3)
A 		3.2
(-1.5)
A 		9
B 2.6
(-3)
A 		8.4
(1.8)
A 		5.7
(-0.5)
A 		9.3
(2.5)
A 		9.9
(3)
A 		6.5
(0.2)
A 		7
C 9.6
(0.1)
A 		12.2
(1.9)
A 		11.8
(1.6)
A 		4.9
(-3)
A 		7.9
(-1)
A 		13.9
(3)
P 		9
avr 4.4
(-3) 		9.9
(3) 		8.9
(1.9) 		8
(0.9) 		6.3
(-0.9) 		7.9
(0.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10421
Sequence Type Exemplar sequence
Representative Public ID W09G12.3 NCBI
Target Description W09G12.3 /REP_DB=WormBase Gene ID /WP=CE18342 /TR=O45202 /GB=AAC04449.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000042748 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1205540:1211946:-1 None
SNAP00000042739 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1205540:1208008:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1205835-1206383(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500054 Delta/Serrate/Lag-2 domain family member (dsl-1) [Caenorhabditis elegans] gb|AAC04450.1| Delta/serrate/lag-2 domain protein 1 [Caenorhabditis elegans] 1.0E-151
blast NP_500054 Delta/Serrate/Lag-2 domain family member (dsl-1) [Caenorhabditis elegans] gb|AAC04450.1| Delta/serrate/lag-2 domain protein 1 [Caenorhabditis elegans] 1.0E-140
blast CAE72757 Hypothetical protein CBG20006 [Caenorhabditis briggsae] 8.0E-67
blast CAE72757 Hypothetical protein CBG20006 [Caenorhabditis briggsae] 3.0E-62
blast C88637 protein W09G12.3 [imported] - Caenorhabditis elegans 8.0E-41
blast C88637 protein W09G12.3 [imported] - Caenorhabditis elegans 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.7E-11
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 1.7E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042748 1 152-174
Sequence
Target Sequence 
>C. ELEGANS:185062_AT
aatatctcatattccttgcaattttgatctctgtcgtcaactctaatggttatatgacaa
ttcgcctgagaaaacgctcgtttaacctccgacttctccctaataaagttgcatttgtga
cgaatattcctgtaaagttcggacgacctggaatagtgttggtgaattgtggttcggttg
atccggtccggaagtttgatattgaatgctttactatacgttcgacacgctggaatacac
atgtgagaagtgtggcttcagacaatgtgatcttgccattaactggatttcaatatgata
ttaagtgtaatagatattggcatggcctttctgcaacaaattctgcaacgacgacgttgc
ccgctcaattaacaggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATCTCATATTCCTTGCAATTTT 287 173 20 Antisense
TTTTGATCTCTGTCGTCAACTCTAA 112 679 41 Antisense
AATTCGCCTGAGAAAACGCTCGTTT 622 177 78 Antisense
CTCCGACTTCTCCCTAATAAAGTTG 218 235 106 Antisense
AAGTTCGGACGACCTGGAATAGTGT 541 153 154 Antisense
ATTGTGGTTCGGTTGATCCGGTCCG 189 3 185 Antisense
AATGCTTTACTATACGTTCGACACG 683 103 224 Antisense
GTTCGACACGCTGGAATACACATGT 58 443 239 Antisense
GGCTTCAGACAATGTGATCTTGCCA 52 539 273 Antisense
ATTGGCATGGCCTTTCTGCAACAAA 344 3 335 Antisense
GACGTTGCCCGCTCAATTAACAGGC 18 377 372 Antisense
Sequence Source Affymetrix Proprietary Database