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[185061_at]

Description F26D11.3 /REP_DB=WormBase Gene ID /WP=CE17707 /TR=O61961 /GB=AAC17750.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 33.6
(-2.4)
A 		27.3
(-3)
A 		52.2
(-0.5)
A 		87
(3)
A 		60
B 83.5
(3)
A 		16.3
(-2.5)
A 		9.8
(-3)
A 		33
(-1.1)
A 		74
C 74.2
(-0.7)
M 		55.5
(-1.4)
A 		7.6
(-3)
A 		181.9
(3)
P 		174
avr 63.8
(0.1) 		33
(-2.2) 		23.2
(-3) 		100.6
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 77.2
(2.4)
A 		32.5
(-3)
A 		55.7
(-0.2)
A 		42.7
(-1.8)
A 		81.9
(3)
A 		34.5
(-2.8)
A 		49
B 21.9
(-1)
A 		10.2
(-2.6)
A 		9.1
(-2.7)
A 		50.9
(3)
A 		39.4
(1.4)
A 		7
(-3)
A 		44
C 37.3
(-1.3)
A 		108.7
(3)
A 		51.9
(-0.4)
A 		9.3
(-3)
A 		24.6
(-2.1)
A 		53.5
(-0.3)
A 		99
avr 45.5
(1.4) 		50.5
(3) 		38.9
(-0.7) 		34.3
(-2.2) 		48.6
(2.4) 		31.7
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 12.2
(1.9)
A 		5.9
(-3)
A 		13.6
(3)
A 		12.7
(2.3)
A 		8
B 26.6
(3)
A 		4
(-2.6)
A 		2.3
(-3)
A 		7
(-1.8)
A 		24
C 24.6
(1.7)
M 		15.9
(-0.2)
A 		2.7
(-3)
A 		30.7
(3)
P 		28
avr 21.1
(3) 		8.6
(-2) 		6.2
(-3) 		16.8
(1.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 14.2
(-0.9)
A 		11.6
(-1.8)
A 		12.1
(-1.6)
A 		10.8
(-2.1)
A 		24.7
(3)
A 		8.4
(-3)
A 		16
B 7.6
(-0.7)
A 		3.4
(-2.5)
A 		2.2
(-3)
A 		13.5
(1.9)
A 		16
(3)
A 		2.6
(-2.8)
A 		14
C 13.8
(-0.7)
A 		33.2
(3)
A 		13.2
(-0.8)
A 		1.9
(-3)
A 		8
(-1.8)
A 		17.9
(0.1)
A 		31
avr 11.9
(-0.4) 		16.1
(2.9) 		9.2
(-2.6) 		8.7
(-3) 		16.2
(3) 		9.6
(-2.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185061_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11657
Sequence Type Exemplar sequence
Representative Public ID F26D11.3 NCBI
Target Description F26D11.3 /REP_DB=WormBase Gene ID /WP=CE17707 /TR=O61961 /GB=AAC17750.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F26D11.3
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F26D11.3 F26D11.3 /REP_DB=WormBase Gene ID /WP=CE17707 /TR=O61961 /GB=AAC17750.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004705 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7951554-7953849(+) 100.0 100.0
chrI:4239534-4241236(-) 90.43 90.43
chrV:14914898-14916595(-) 90.14 90.14
chrV:10620163-10621866(-) 91.3 91.3
chrV:6574886-6576541(-) 90.72 90.72
Sequence
Target Sequence 
>C. ELEGANS:185061_AT
atgttcgaatgcattcccatttcaatatatgcacggcctctctcaatttcatttatttca
aaattcctctttttctctcacactctctcacgatcactagaggtcccaaaaaaaatccat
ttttcgagatttatcagcgaatcgccggctttaaacagttttgtctggagaatcactaat
tttgaactttcacatgtgggcgtattcatagattttgttcactatcagccgtttccggtc
tattttaccgttttcagtacaaattcggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTCGAATGCATTCCCATTTCAA 185 47 13 Antisense
GTTCGAATGCATTCCCATTTCAATA 659 441 15 Antisense
GAATGCATTCCCATTTCAATATATG 327 331 19 Antisense
TTTCAATATATGCACGGCCTCTCTC 522 673 32 Antisense
ACAGTTTTGTCTGGAGAATCACTAA 333 107 167 Antisense
AGAATCACTAATTTTGAACTTTCAC 335 75 181 Antisense
GGGCGTATTCATAGATTTTGTTCAC 374 493 210 Antisense
GATTTTGTTCACTATCAGCCGTTTC 560 429 223 Antisense
ACTATCAGCCGTTTCCGGTCTATTT 631 99 233 Antisense
TATCAGCCGTTTCCGGTCTATTTTA 371 657 235 Antisense
TACCGTTTTCAGTACAAATTCGGCT 223 649 258 Antisense
Sequence Source Affymetrix Proprietary Database