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[185060_s_at]

Description Y116A8A.2 /REP_DB=WormBase Gene ID /WP=CE23306 /TR=Q9U2W1 /GB=CAB55164.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 08      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 23.9
(-3)
A 		24.3
(-2.9)
A 		55.5
(3)
M 		36.9
(-0.5)
A 		32
B 27
(2)
M 		29.4
(3)
A 		16.7
(-2.1)
A 		14.6
(-3)
A 		15
C 20.7
(-2.4)
P 		21.7
(-2.3)
A 		13.7
(-3)
A 		82.8
(3)
P 		69
avr 23.9
(-3) 		25.1
(-2.7) 		28.6
(-1.7) 		44.8
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 57.1
(3)
M 		20.6
(-1.4)
A 		45.7
(1.6)
A 		7
(-3)
A 		13.5
(-2.2)
A 		25.1
(-0.8)
A 		50
B 23.3
(-3)
A 		28.8
(-0.9)
A 		30.1
(-0.4)
A 		39.3
(3)
A 		37.3
(2.3)
P 		24.1
(-2.7)
P 		16
C 33.7
(1.4)
A 		26.2
(0)
A 		9.8
(-3)
A 		42.5
(3)
M 		19.3
(-1.3)
P 		32.8
(1.2)
M 		33
avr 38
(3) 		25.2
(-2.3) 		28.5
(-0.9) 		29.6
(-0.5) 		23.4
(-3) 		27.3
(-1.4) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.7
(-0.8)
A 		5.3
(-3)
A 		14.5
(3)
M 		5.4
(-2.9)
A 		9
B 8.6
(3)
M 		7.3
(1.6)
A 		3.9
(-2.1)
A 		3.1
(-3)
A 		6
C 6.8
(-1.7)
P 		6.2
(-2.1)
A 		4.8
(-3)
A 		14
(3)
P 		9
avr 8
(3) 		6.3
(-3) 		7.7
(1.9) 		7.5
(1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.5
(3)
M 		7.3
(0.8)
A 		10
(2.7)
A 		1.8
(-3)
A 		4.1
(-1.4)
A 		6.1
(-0)
A 		9
B 8.1
(-2.4)
A 		9.6
(-1.3)
A 		7.3
(-3)
A 		10.4
(-0.6)
A 		15.2
(3)
P 		9
(-1.7)
P 		8
C 12.5
(3)
A 		8
(0.3)
A 		2.5
(-3)
A 		8.5
(0.6)
M 		6.3
(-0.7)
P 		11
(2.1)
M 		10
avr 10.4
(3) 		8.3
(-0.3) 		6.6
(-3) 		6.9
(-2.5) 		8.5
(0) 		8.7
(0.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185060_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8510
Sequence Type Exemplar sequence
Representative Public ID Y116A8A.2 NCBI
Target Description Y116A8A.2 /REP_DB=WormBase Gene ID /WP=CE23306 /TR=Q9U2W1 /GB=CAB55164.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070594(11), NM_070591(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070594 NCBI Caenorhabditis elegans Y116A8A.7 (Y116A8A.7) mRNA, complete cds. 11/11 None
NM_070591 NCBI Caenorhabditis elegans Y116A8A.2 (Y116A8A.2) mRNA, complete cds. 11/11 None
SNAP00000018647 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16813327:16817104:-1 9/11 None
SNAP00000018650 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16830167:16830718:1 11/11 None
GENEFINDER00000018655 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16804986:16813883:-1 11/11 None
Y116A8A.2 ENSEMBL cdna:known chromosome:CEL140:IV:16813327:16813883:-1 gene:Y116A8A.2 11/11 None
Y116A8A.7 ENSEMBL cdna:known chromosome:CEL140:IV:16830167:16830718:1 gene:Y116A8A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018659 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16830172-16830724(+) 93.53 93.53
chrIV:16813332-16813889(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y116A8A.2
Y116A8A.7
Entrez Gene 190983 Entrez gene
190987 Entrez gene
SwissProt Q9U2W1 EMBL-EBI
Q9U2V8 EMBL-EBI
WormBase CE23306 Wormbase
CE24145 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55165 Hypothetical protein Y116A8A.3 [Caenorhabditis elegans] ref|NP_502991.1| Y116A8A.3 [Caenorhabditis elegans] 1.0E-101
blast CAB55164 Hypothetical protein Y116A8A.2 [Caenorhabditis elegans] ref|NP_502992.1| Y116A8A.2 [Caenorhabditis elegans] 1.0E-89
blast CAB55166 Hypothetical protein Y116A8A.7 [Caenorhabditis elegans] ref|NP_502995.1| Y116A8A.7 [Caenorhabditis elegans] 2.0E-87
blast CAB55164 Hypothetical protein Y116A8A.2 [Caenorhabditis elegans] ref|NP_502992.1| Y116A8A.2 [Caenorhabditis elegans] 2.0E-83
blast CAB55164 Hypothetical protein Y116A8A.2 [Caenorhabditis elegans] ref|NP_502992.1| Y116A8A.2 [Caenorhabditis elegans] 5.0E-81
blast CAB55164 Hypothetical protein Y116A8A.2 [Caenorhabditis elegans] ref|NP_502992.1| Y116A8A.2 [Caenorhabditis elegans] 1.0E-79
blast CAB55166 Hypothetical protein Y116A8A.7 [Caenorhabditis elegans] ref|NP_502995.1| Y116A8A.7 [Caenorhabditis elegans] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.3E-31
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.8E-31
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.3E-31
Sequence
Target Sequence 
>C. ELEGANS:185060_S_AT
tacttttcgactttcatgatttattctccactacaaacagtgacagtttatctgctccac
attttcccccaatcaaacgtaacacaattcctgaataccaatcagttccaccgggagccg
tcattactgaaccagcaaaaaagataatattcaatgctccatttgacagtatgcatactt
atcaagtgaaagttatcaatttatcagatagaacaattgcttataatatcagaacactca
atatgaaacgattctccatttatccaccgtgtggtattctgaagaaaacacaaaatatgt
tctttaatatcacatttgctccatttaattatacaactgaaaacactaaaaatgatcgga
ttactgtgaaatggattaatacaccaaataatgaagatgatgagtactttcgagagtggt
ttcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTTTCGACTTTCATGATTTATT 670 645 47 Antisense
GACTTTCATGATTTATTCTCCACTA 596 371 55 Antisense
AACGTAACACAATTCCTGAATACCA 548 143 122 Antisense
CTGAATACCAATCAGTTCCACCGGG 118 211 137 Antisense
TCCACCGGGAGCCGTCATTACTGAA 601 587 153 Antisense
GAGCCGTCATTACTGAACCAGCAAA 637 385 161 Antisense
AAAGATAATATTCAATGCTCCATTT 372 123 186 Antisense
TGAAACGATTCTCCATTTATCCACC 288 573 290 Antisense
ATGTTCTTTAATATCACATTTGCTC 507 47 343 Antisense
CACATTTGCTCCATTTAATTATACA 63 197 357 Antisense
GAGTACTTTCGAGAGTGGTTTCATG 676 397 448 Antisense
Sequence Source Affymetrix Proprietary Database