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[185059_at]

Description T05H4.12 /REP_DB=WormBase Gene ID /WP=CE13291 /TR=O16517 /GB=AAB66018.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 27      6grp_total > 42      4grp_total > 59      6grp_highest_sub > 03      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4924
1 2 3 4 range
A 6846.9
(0.2)
P 		8350.4
(2.2)
P 		8985
(3)
P 		4477.4
(-3)
P 		4508
B 7098.7
(0.4)
P 		7744.1
(1.3)
P 		8893.5
(3)
P 		4820.3
(-3)
P 		4073
C 6893.2
(1)
P 		8286.8
(3)
P 		8090.6
(2.7)
P 		4060.6
(-3)
P 		4226
avr 6946.3
(0.6) 		8127.1
(2.2) 		8656.4
(3) 		4452.8
(-3) 		4204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4931
1 2 3 4 5 6 range
A 8210.7
(1.9)
P 		7545.9
(0.5)
P 		8732.1
(3)
P 		7818.3
(1)
P 		6867.3
(-1)
P 		5940.7
(-3)
P 		2791
B 8355.3
(0.1)
P 		8337.5
(0.1)
P 		10713.5
(3)
P 		9255.9
(1.2)
P 		6412.1
(-2.2)
P 		5782.5
(-3)
P 		4931
C 8012.8
(0.6)
P 		7638.9
(-0.3)
P 		9086.2
(3)
P 		8179.8
(0.9)
P 		7734.8
(-0.1)
P 		6446.4
(-3)
P 		2640
avr 8192.9
(0.7) 		7840.8
(0.1) 		9510.6
(3) 		8418
(1.1) 		7004.7
(-1.4) 		6056.5
(-3) 		3454
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2164
1 2 3 4 range
A 2493
(3)
P 		1812.6
(0.8)
P 		2348.9
(2.5)
P 		655.4
(-3)
P 		1838
B 2263.7
(3)
P 		1912.6
(1.3)
P 		2060.8
(2)
P 		1027.2
(-3)
P 		1237
C 2281.8
(1.5)
P 		2382.5
(1.8)
P 		2819.8
(3)
P 		684.7
(-3)
P 		2135
avr 2346.2
(2.8) 		2035.9
(1.6) 		2409.8
(3) 		789.1
(-3) 		1621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1524
1 2 3 4 5 6 range
A 1513.6
(-2.7)
P 		2683.7
(3)
P 		1901.7
(-0.8)
P 		1982.9
(-0.4)
P 		2072.2
(0)
P 		1446.4
(-3)
P 		1237
B 2907.2
(3)
P 		2775.2
(1.9)
P 		2601.6
(0.6)
P 		2451.6
(-0.6)
P 		2605.2
(0.6)
P 		2156.3
(-3)
P 		751
C 2970
(3)
P 		2330.8
(0.1)
P 		2312.6
(0)
P 		1645
(-3)
P 		2502.9
(0.9)
P 		2158
(-0.7)
P 		1325
avr 2463.6
(1.8) 		2596.6
(3) 		2272
(0.1) 		2026.5
(-2.1) 		2393.4
(1.2) 		1920.2
(-3) 		676
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185059_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11266
Sequence Type Exemplar sequence
Representative Public ID T05H4.12 NCBI
Target Description T05H4.12 /REP_DB=WormBase Gene ID /WP=CE13291 /TR=O16517 /GB=AAB66018.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072232(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072232 NCBI Caenorhabditis elegans T05H4.12 (T05H4.12) mRNA, complete cds. 11/11 A 
SNAP00000040305 ENSEMBL cdna:SNAP chromosome:CEL140:V:6428990:6429704:-1 11/11 None
GENEFINDER00000040318 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6428990:6429923:-1 11/11 None
T05H4.12.1 ENSEMBL cdna:known chromosome:CEL140:V:6428787:6429706:-1 gene:T05H4.12 11/11 A 
T05H4.12.2 ENSEMBL cdna:known chromosome:CEL140:V:6428814:6429708:-1 gene:T05H4.12 11/11 A 
T05H4.12.3 ENSEMBL cdna:known chromosome:CEL140:V:6428902:6429792:-1 gene:T05H4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6428989-6429704(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol atp-4
Ensembl T05H4.12
Entrez Gene 179025 Entrez gene
SwissProt O16517 EMBL-EBI
WormBase CE13291 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504633 T05H4.12 [Caenorhabditis elegans] gb|AAB66018.1| Hypothetical protein T05H4.12 [Caenorhabditis elegans] 1.0E-55
blast CAE71876 Hypothetical protein CBG18931 [Caenorhabditis briggsae] 6.0E-54
Sequence
Target Sequence 
>C. ELEGANS:185059_AT
cgccaggacttgatccagcagactttcgtcaccaagatccgcgaaatcgccaagaacgcc
ggtaacctggctaactctgatccagccgttaagaaggctctccaggaagagctcaacaga
ttggccaccaagttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCAGGACTTGATCCAGCAGACTT 583 257 64 Antisense
TTGATCCAGCAGACTTTCGTCACCA 667 705 73 Antisense
CAGCAGACTTTCGTCACCAAGATCC 658 201 79 Antisense
TCGTCACCAAGATCCGCGAAATCGC 17 605 89 Antisense
CCGCGAAATCGCCAAGAACGCCGGT 406 261 102 Antisense
GAACGCCGGTAACCTGGCTAACTCT 293 347 117 Antisense
ACCTGGCTAACTCTGATCCAGCCGT 185 89 128 Antisense
GATCCAGCCGTTAAGAAGGCTCTCC 409 415 142 Antisense
CCGTTAAGAAGGCTCTCCAGGAAGA 496 1 149 Antisense
GGAAGAGCTCAACAGATTGGCCACC 534 531 168 Antisense
GCTCAACAGATTGGCCACCAAGTTC 56 303 174 Antisense
Sequence Source Affymetrix Proprietary Database