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[185058_at]

Description Y116A8C.3 /REP_DB=WormBase Gene ID /WP=CE23314 /TR=Q9NAL1 /GB=CAB76734.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 121
(-3)
A 		170.3
(3)
P 		125.6
(-2.4)
A 		137.9
(-0.9)
A 		49
B 115.5
(-3)
P 		147
(0.8)
P 		163.5
(2.7)
A 		165.8
(3)
P 		50
C 160
(-2.1)
P 		212.7
(2.7)
P 		150.1
(-3)
A 		215.5
(3)
M 		65
avr 132.2
(-3) 		176.7
(3) 		146.4
(-1.1) 		173.1
(2.5) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 121
(-1.1)
P 		140.1
(0.4)
M 		94.9
(-3)
A 		175.7
(3)
P 		109.7
(-1.9)
A 		107.7
(-2)
A 		81
B 110.2
(-1.7)
M 		130.9
(0.6)
M 		152.7
(3)
P 		98
(-3)
A 		117.7
(-0.8)
P 		99.3
(-2.9)
A 		55
C 134.4
(0.6)
P 		145.9
(1.2)
P 		180.4
(3)
P 		173.3
(2.6)
P 		108.2
(-0.8)
P 		67.5
(-3)
A 		113
avr 121.9
(0.2) 		139
(2) 		142.7
(2.3) 		149
(3) 		111.9
(-0.9) 		91.5
(-3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 44
(3)
A 		37
(1.2)
P 		32.8
(0.2)
A 		20.2
(-3)
A 		24
B 36.8
(0.5)
P 		36.3
(-0.7)
P 		37.9
(3)
A 		35.3
(-3)
P 		3
C 53
(1)
P 		61.1
(3)
P 		52.3
(0.9)
A 		36.3
(-3)
M 		25
avr 44.6
(2.9) 		44.8
(3) 		41
(1.4) 		30.6
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 22.3
(-2.7)
P 		49.8
(3)
M 		20.7
(-3)
A 		44.6
(1.9)
P 		33.1
(-0.4)
A 		26.2
(-1.9)
A 		29
B 38.3
(0.4)
M 		43.6
(1.8)
M 		37.1
(0.1)
P 		26
(-3)
A 		47.8
(3)
P 		37
(0)
A 		22
C 49.8
(3)
P 		44.5
(1.8)
P 		45.9
(2.1)
P 		34.9
(-0.3)
P 		35
(-0.3)
P 		22.6
(-3)
A 		27
avr 36.8
(-0.2) 		46
(3) 		34.6
(-0.9) 		35.2
(-0.7) 		38.6
(0.4) 		28.6
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185058_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10326
Sequence Type Exemplar sequence
Representative Public ID Y116A8C.3 NCBI
Target Description Y116A8C.3 /REP_DB=WormBase Gene ID /WP=CE23314 /TR=Q9NAL1 /GB=CAB76734.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070602(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070602 NCBI Caenorhabditis elegans Y116A8C.3 (Y116A8C.3) mRNA, complete cds. 11/11 None
GENEFINDER00000004196 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16916076:16924224:1 11/11 None
Y116A8C.3 ENSEMBL cdna:known chromosome:CEL140:IV:16916076:16920169:1 gene:Y116A8C.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004072 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16916081-16920175(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8C.3
Entrez Gene 190992 Entrez gene
SwissProt Q9NAL1 EMBL-EBI
WormBase CE23314 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4198 calpain activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55146 Hypothetical protein Y116A8C.4 [Caenorhabditis elegans] ref|NP_503004.1| Y116A8C.4 [Caenorhabditis elegans] 0.0
blast CAB76734 Hypothetical protein Y116A8C.3 [Caenorhabditis elegans] ref|NP_503003.1| Y116A8C.3 [Caenorhabditis elegans] 1.0E-157
blast CAB55147 Hypothetical protein Y116A8C.5 [Caenorhabditis elegans] ref|NP_503005.1| Y116A8C.5 [Caenorhabditis elegans] 1.0E-152
blast AAB66080 Hypothetical protein F18A12.1 [Caenorhabditis elegans] ref|NP_494537.1| F18A12.1 [Caenorhabditis elegans] 1.0E-151
blast CAE57381 Hypothetical protein CBG00329 [Caenorhabditis briggsae] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001300 EMBL-EBI Peptidase C2, calpain 5.9E-10
Pfam IPR001300 EMBL-EBI Peptidase C2, calpain 5.9E-10
Pfam IPR008753 EMBL-EBI Peptidase M13 6.6E-6
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 1.1E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503003.1 2 5-24,253-270
Y116A8C.3 2 5-24,253-270
GENEFINDER00000004196 3 5-24,309-331,338-360
Sequence
Target Sequence 
>C. ELEGANS:185058_AT
gcacactacttgatcgagttcgccaggcttttgatcgaaatacccggaaaaactgaagcc
aaattgattaatgatttggatagccttacaacttatctggacagctgcaaggacgccgag
tgccttattgattttcagcagcagtttggaagagaatttgagcaggctatcacaaaggta
ggtgagaacccgtcggatgtcggccgcaagttgatcgcaaatcattcattcaaaatacat
actagaaaaagttcaaagcagaaagcacacagagagccaatccagccaaaaatccaagct
gtgaagagggagacaagggcatgccgatcatggtggaccgcggacgtagtcggagtccga
aaatacggaactaaaaaatatggacgcgtactgtctcaagacgaaatttccaagcagaaa
ccggtttggaaagatgttcgcctcagaagatccgccgtcgctcgctttgatattgatcca
ggagactatgtcattattccttcaacaaaagagccaaatcgctgccttgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACACTACTTGATCGAGTTCGCCA 392 317 202 Antisense
ATCTGGACAGCTGCAAGGACGCCGA 670 31 296 Antisense
ACGCCGAGTGCCTTATTGATTTTCA 531 91 314 Antisense
AGGTGAGAACCCGTCGGATGTCGGC 409 55 381 Antisense
GTCGGCCGCAAGTTGATCGCAAATC 19 473 400 Antisense
AGGGCATGCCGATCATGGTGGACCG 327 59 517 Antisense
GTGGACCGCGGACGTAGTCGGAGTC 545 489 534 Antisense
ATGGACGCGTACTGTCTCAAGACGA 560 51 581 Antisense
AAGATGTTCGCCTCAGAAGATCCGC 393 155 632 Antisense
CGTCGCTCGCTTTGATATTGATCCA 299 245 657 Antisense
AAAGAGCCAAATCGCTGCCTTGACT 698 121 709 Antisense
Sequence Source Affymetrix Proprietary Database