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[185057_at]

Description ZK1055.3 /REP_DB=WormBase Gene ID /WP=CE18472 /TR=O76445 /GB=AAC19261.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 8.7
(-2.1)
A 		2.4
(-3)
A 		45.2
(3)
A 		5.6
(-2.6)
A 		43
B 24.3
(-0.1)
A 		8.2
(-3)
A 		18.7
(-1.1)
A 		41.4
(3)
A 		33
C 9.2
(-1.3)
A 		4.4
(-2.7)
A 		3.3
(-3)
A 		24.4
(3)
A 		21
avr 14.1
(-0.1) 		5
(-3) 		22.4
(2.6) 		23.8
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 19.1
(0.8)
A 		8
(-1.7)
A 		16
(0.1)
A 		28.8
(3)
A 		2.5
(-3)
A 		22.1
(1.5)
A 		26
B 1.7
(-3)
A 		23
(3)
A 		6.5
(-1.6)
A 		4.2
(-2.3)
A 		15.7
(0.9)
A 		12.2
(-0)
A 		21
C 3.3
(-2.1)
A 		16.6
(3)
A 		0.9
(-3)
A 		13.8
(1.9)
A 		1.6
(-2.7)
A 		3.9
(-1.9)
A 		16
avr 8
(-2.1) 		15.9
(3) 		7.8
(-2.2) 		15.6
(2.8) 		6.6
(-3) 		12.7
(0.9) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 3.2
(-1.6)
A 		0.5
(-3)
A 		11.8
(3)
A 		0.8
(-2.8)
A 		11
B 7.8
(2.1)
A 		2
(-3)
A 		4.3
(-1)
A 		8.8
(3)
A 		7
C 3.1
(0.9)
A 		1.3
(-2.8)
A 		1.2
(-3)
A 		4.1
(3)
A 		3
avr 4.7
(1.5) 		1.3
(-3) 		5.8
(3) 		4.6
(1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 3.5
(-0.5)
A 		2.8
(-1.1)
A 		3.5
(-0.5)
A 		7.3
(3)
A 		0.7
(-3)
A 		5.4
(1.3)
A 		7
B 0.6
(-3)
A 		7.7
(3)
A 		1.6
(-2.2)
A 		1.1
(-2.6)
A 		6.4
(1.9)
A 		4.5
(0.3)
A 		7
C 1.2
(-1.8)
A 		5.1
(3)
A 		0.2
(-3)
A 		2.8
(0.2)
A 		0.5
(-2.6)
A 		1.3
(-1.7)
A 		5
avr 1.8
(-3) 		5.2
(3) 		1.8
(-3) 		3.7
(0.4) 		2.5
(-1.8) 		3.7
(0.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185057_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11626
Sequence Type Exemplar sequence
Representative Public ID ZK1055.3 NCBI
Target Description ZK1055.3 /REP_DB=WormBase Gene ID /WP=CE18472 /TR=O76445 /GB=AAC19261.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072274(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072274 NCBI Caenorhabditis elegans ZK1055.3 (ZK1055.3) mRNA, complete cds. 11/11 None
GENEFINDER00000018296 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6592776:6593636:1 10/11 None
ZK1055.3 ENSEMBL cdna:known chromosome:CEL140:V:6593177:6593636:1 gene:ZK1055.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6593176-6593636(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1055.3
Entrez Gene 191512 Entrez gene
SwissProt O76445 EMBL-EBI
WormBase CE18472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19261 Hypothetical protein ZK1055.3 [Caenorhabditis elegans] ref|NP_504675.1| ZK1055.3 [Caenorhabditis elegans] 3.0E-51
blast AAC19261 Hypothetical protein ZK1055.3 [Caenorhabditis elegans] ref|NP_504675.1| ZK1055.3 [Caenorhabditis elegans] 1.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504675.1 1 22-44
ZK1055.3 1 22-44
GENEFINDER00000018296 1 53-75
Sequence
Target Sequence 
>C. ELEGANS:185057_AT
gagactaaagtattccctggttccaaatgctgaaaaaaaattggatttttcttctgttct
gatagtatttgcagttgttaccttaacatatatttgttttatttattatttcaatgtgat
acccggaaacaaaactgtctggaaaaagactgaagtattgagacgaaaattcgtactgaa
cggaagtttgtcgtttcatgttttgaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACTAAAGTATTCCCTGGTTCCA 83 393 24 Antisense
AAGTATTCCCTGGTTCCAAATGCTG 230 157 31 Antisense
TATTCCCTGGTTCCAAATGCTGAAA 130 663 34 Antisense
GGATTTTTCTTCTGTTCTGATAGTA 335 507 66 Antisense
TTCTTCTGTTCTGATAGTATTTGCA 612 689 72 Antisense
AGTATTTGCAGTTGTTACCTTAACA 407 63 87 Antisense
TTATTATTTCAATGTGATACCCGGA 610 671 126 Antisense
GATACCCGGAAACAAAACTGTCTGG 277 413 141 Antisense
GACGAAAATTCGTACTGAACGGAAG 491 377 185 Antisense
TTCGTACTGAACGGAAGTTTGTCGT 188 687 193 Antisense
GTTTGTCGTTTCATGTTTTGAATGA 330 451 209 Antisense
Sequence Source Affymetrix Proprietary Database