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[185054_at]

Description Y71H2B.1 /REP_DB=WormBase Gene ID /WP=CE22956 /TR=Q9N4E7 /GB=AAF36031.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 36      6grp_total > 45      4grp_total > 03      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 79.2
(-2.2)
M 		64.9
(-2.5)
A 		39.5
(-3)
A 		322.4
(3)
P 		283
B 88.5
(-2.2)
P 		69.8
(-2.7)
A 		58.6
(-3)
A 		273.1
(3)
P 		215
C 85.4
(-2.8)
P 		77.3
(-3)
M 		77.7
(-3)
A 		342
(3)
P 		265
avr 84.4
(-2.4) 		70.7
(-2.7) 		58.6
(-3) 		312.5
(3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 87.5
(0.6)
P 		60.2
(-1.4)
A 		120.5
(3)
P 		38.6
(-3)
A 		72.2
(-0.5)
A 		86.8
(0.5)
P 		82
B 133.5
(3)
P 		104.3
(0.7)
P 		119.6
(1.9)
P 		86.8
(-0.7)
M 		57.2
(-3)
P 		105.2
(0.8)
P 		76
C 114.1
(1.5)
P 		136.5
(3)
P 		88
(-0.3)
P 		70
(-1.6)
P 		48.9
(-3)
P 		129.8
(2.5)
P 		88
avr 111.7
(3) 		100.3
(1.7) 		109.4
(2.7) 		65.1
(-2.3) 		59.4
(-3) 		107.3
(2.5) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 28.8
(0)
M 		14.1
(-2.4)
A 		10.3
(-3)
A 		47.2
(3)
P 		37
B 28.2
(-1)
P 		17.2
(-2.5)
A 		13.6
(-3)
A 		58.2
(3)
P 		45
C 28.3
(-2)
P 		22.2
(-3)
M 		27.1
(-2.2)
A 		57.7
(3)
P 		36
avr 28.4
(-1.2) 		17.8
(-2.9) 		17
(-3) 		54.4
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 16.1
(-0.7)
P 		21.4
(1.2)
A 		26.2
(3)
P 		9.8
(-3)
A 		21.8
(1.4)
A 		21.1
(1.1)
P 		16
B 46.4
(3)
P 		34.7
(0)
P 		29
(-1.5)
P 		23
(-3)
M 		23.3
(-2.9)
P 		39.2
(1.2)
P 		23
C 42.3
(2.8)
P 		41.6
(2.6)
P 		22.4
(-1.3)
P 		14.1
(-3)
P 		15.8
(-2.7)
P 		43.4
(3)
P 		29
avr 34.9
(3) 		32.6
(2.3) 		25.9
(0.2) 		15.6
(-3) 		20.3
(-1.5) 		34.6
(2.9) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185054_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7251
Sequence Type Exemplar sequence
Representative Public ID Y71H2B.1 NCBI
Target Description Y71H2B.1 /REP_DB=WormBase Gene ID /WP=CE22956 /TR=Q9N4E7 /GB=AAF36031.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065192
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000014039 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2629031:2631287:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065192 8/11 Cross Hyb Matching Probes None
SNAP00000014013 8/11 Cross Hyb Matching Probes None
Y71H2B.1 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2629030-2631287(+) 82.32 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36031 Hypothetical protein Y71H2B.1 [Caenorhabditis elegans] ref|NP_497593.1| Y71H2B.1 [Caenorhabditis elegans] 3.0E-73
blast CAE64993 Hypothetical protein CBG09829 [Caenorhabditis briggsae] 2.0E-69
Sequence
Target Sequence 
>C. ELEGANS:185054_AT
gatttttcgttcacaggggtcgtggccttcttcatgagccgcgacgcgacacgcaacgcg
ccttaaatctaccccagatatggccgagccaaaatggcctaattcggcaaacgcttccat
ttcaatctatgagggaagccagaaatccatgggaagcatggaaacgcgaagaagttgaag
cccgccaacgtggactcgaattcaaaatgtattgggagaagcggcataaggaggatcgag
atgcgtggaggcttaaggactttgccaacgcgatcgacaaaatgagccgtgcggggtata
aaggaaagcacggagattttgaagttccagctgaacgctacgaagagctcaatgcacttt
atatgcaggcgactgtaggcgattacgatggaaatacggctctgaaatgcggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTTCGTTCACAGGGGTCGTGG 381 91 122 Antisense
TGGCCTAATTCGGCAAACGCTTCCA 643 543 216 Antisense
AACGCTTCCATTTCAATCTATGAGG 598 145 231 Antisense
GCGAAGAAGTTGAAGCCCGCCAACG 520 253 287 Antisense
CCCGCCAACGTGGACTCGAATTCAA 83 261 302 Antisense
GAGGATCGAGATGCGTGGAGGCTTA 520 401 352 Antisense
GCTTAAGGACTTTGCCAACGCGATC 126 305 372 Antisense
GCGATCGACAAAATGAGCCGTGCGG 593 289 391 Antisense
GTTCCAGCTGAACGCTACGAAGAGC 246 439 445 Antisense
TGCAGGCGACTGTAGGCGATTACGA 456 577 485 Antisense
GAAATACGGCTCTGAAATGCGGTCA 387 363 512 Antisense
Sequence Source Affymetrix Proprietary Database