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[185053_s_at]

Description Y116A8A.1 /REP_DB=WormBase Gene ID /WP=CE23305 /TR=Q9U2W4 /GB=CAB55161.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 37.5
(-2.2)
A 		30.7
(-3)
A 		30.3
(-3)
A 		84.8
(3)
A 		55
B 58.4
(3)
P 		39
(-0.4)
A 		24
(-3)
A 		31.9
(-1.6)
A 		34
C 29.4
(-1.8)
A 		29.4
(-1.8)
A 		19.5
(-3)
A 		70.1
(3)
M 		51
avr 41.8
(-0.3) 		33
(-1.7) 		24.6
(-3) 		62.3
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6.2
(-2.6)
A 		12.2
(-1.6)
A 		39.7
(3)
A 		4
(-3)
A 		21.7
(-0)
A 		10
(-2)
A 		36
B 37.1
(3)
A 		24.9
(0.8)
A 		20.4
(0)
A 		3.2
(-3)
A 		5.4
(-2.6)
A 		19.1
(-0.2)
A 		34
C 25.6
(2.7)
A 		23.9
(2.3)
A 		10.8
(-1.4)
A 		26.5
(3)
A 		14.4
(-0.4)
A 		5.1
(-3)
A 		21
avr 23
(2.7) 		20.3
(1.4) 		23.6
(3) 		11.2
(-3) 		13.8
(-1.7) 		11.4
(-2.9) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.6
(3)
A 		6.7
(-3)
A 		7.9
(-2)
A 		12.4
(2)
A 		7
B 18.6
(3)
P 		9.6
(-1.2)
A 		5.6
(-3)
A 		6.8
(-2.4)
A 		13
C 9.7
(0.5)
A 		8.4
(-1.1)
A 		6.8
(-3)
A 		11.8
(3)
M 		5
avr 14
(3) 		8.2
(-1.8) 		6.8
(-3) 		10.3
(-0.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		4.3
(-0.4)
A 		8.6
(3)
A 		1
(-3)
A 		6.6
(1.4)
A 		2.4
(-1.9)
A 		8
B 12.9
(3)
A 		8.3
(0.7)
A 		5
(-0.9)
A 		0.8
(-3)
A 		2.2
(-2.3)
A 		7.1
(0.1)
A 		12
C 9.5
(3)
A 		7.3
(1.3)
A 		2.7
(-2.2)
A 		5.3
(-0.2)
A 		4.7
(-0.7)
A 		1.7
(-3)
A 		8
avr 7.8
(3) 		6.6
(1.7) 		5.4
(0.3) 		2.4
(-3) 		4.5
(-0.7) 		3.7
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185053_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10139
Sequence Type Exemplar sequence
Representative Public ID Y116A8A.1 NCBI
Target Description Y116A8A.1 /REP_DB=WormBase Gene ID /WP=CE23305 /TR=Q9U2W4 /GB=CAB55161.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070589(11), NM_070590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070589 NCBI Caenorhabditis elegans Y116A8A.1 (Y116A8A.1) mRNA, complete cds. 11/11 A 
NM_070590 NCBI Caenorhabditis elegans Y116A8A.3 (Y116A8A.3) mRNA, complete cds. 11/11 A 
SNAP00000018645 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16803594:16804039:1 11/11 None
SNAP00000018646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16804986:16806399:-1 11/11 None
GENEFINDER00000018655 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16804986:16813883:-1 11/11 None
GENEFINDER00000018656 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16802040:16804039:1 11/11 None
Y116A8A.1 ENSEMBL cdna:known chromosome:CEL140:IV:16802040:16804039:1 gene:Y116A8A.1 11/11 A 
Y116A8A.3 ENSEMBL cdna:known chromosome:CEL140:IV:16804986:16806399:-1 gene:Y116A8A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16802045-16804045(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y116A8A.1
Y116A8A.3
Entrez Gene 190982 Entrez gene
190984 Entrez gene
SwissProt Q9U2W4 EMBL-EBI
Q9U2W0 EMBL-EBI
WormBase CE23305 Wormbase
CE23307 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55165 Hypothetical protein Y116A8A.3 [Caenorhabditis elegans] ref|NP_502991.1| Y116A8A.3 [Caenorhabditis elegans] 1.0E-111
blast CAB55165 Hypothetical protein Y116A8A.3 [Caenorhabditis elegans] ref|NP_502991.1| Y116A8A.3 [Caenorhabditis elegans] 1.0E-101
blast CAB55161 Hypothetical protein Y116A8A.1 [Caenorhabditis elegans] ref|NP_502990.1| Y116A8A.1 [Caenorhabditis elegans] 2.0E-96
blast CAB55164 Hypothetical protein Y116A8A.2 [Caenorhabditis elegans] ref|NP_502992.1| Y116A8A.2 [Caenorhabditis elegans] 5.0E-81
blast CAB55161 Hypothetical protein Y116A8A.1 [Caenorhabditis elegans] ref|NP_502990.1| Y116A8A.1 [Caenorhabditis elegans] 1.0E-77
blast CAB55165 Hypothetical protein Y116A8A.3 [Caenorhabditis elegans] ref|NP_502991.1| Y116A8A.3 [Caenorhabditis elegans] 2.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.3E-31
Sequence
Target Sequence 
>C. ELEGANS:185053_S_AT
aaaacttacatacttggctgcacaaactgcgtgtataaaccttggtggtgctctttccgg
tcttcagaatgataaagaacgcgtctggattggaaataaaggaatggaaataatgcttgc
aaacggcggaacagactctggaacatggctcggagcgaaatgctcatctagtgggtgcac
ttggacagacggaaacacagttggcacacagggaatgatgtttgctcctggagagccaaa
tcagctaagctaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTTACATACTTGGCTGCACAA 372 131 165 Antisense
GGCTGCACAAACTGCGTGTATAAAC 153 541 180 Antisense
ATAAACCTTGGTGGTGCTCTTTCCG 566 23 199 Antisense
TGCTCTTTCCGGTCTTCAGAATGAT 205 581 213 Antisense
GCAAACGGCGGAACAGACTCTGGAA 156 319 283 Antisense
GACTCTGGAACATGGCTCGGAGCGA 255 375 298 Antisense
GAAATGCTCATCTAGTGGGTGCACT 543 361 321 Antisense
GTGGGTGCACTTGGACAGACGGAAA 13 489 335 Antisense
GAAACACAGTTGGCACACAGGGAAT 647 355 356 Antisense
GGAATGATGTTTGCTCCTGGAGAGC 240 533 376 Antisense
GAGAGCCAAATCAGCTAAGCTACCC 642 393 395 Antisense
Sequence Source Affymetrix Proprietary Database