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[185052_at]

Description Y116A8A.1 /REP_DB=WormBase Gene ID /WP=CE23305 /TR=Q9U2W4 /GB=CAB55161.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 10      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 1.5
(-3)
A 		2.4
(-2.9)
A 		4.5
(-2.6)
A 		49.8
(3)
A 		48
B 7.8
(-2.2)
A 		12.8
(-1.7)
A 		1.4
(-3)
A 		52.3
(3)
A 		51
C 3.4
(-2.6)
A 		2.2
(-2.8)
A 		0.7
(-3)
A 		44.5
(3)
P 		44
avr 4.2
(-2.7) 		5.8
(-2.5) 		2.2
(-3) 		48.9
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 27.7
(3)
A 		1.2
(-2.9)
A 		8
(-1.4)
A 		0.9
(-3)
A 		5.2
(-2)
A 		1.6
(-2.8)
A 		27
B 27.8
(3)
A 		2.4
(-2.6)
A 		3.2
(-2.4)
A 		1.2
(-2.9)
A 		0.6
(-3)
A 		11.9
(-0.5)
A 		27
C 1.4
(-3)
A 		2.2
(-2.4)
A 		1.5
(-2.9)
A 		9.3
(3)
A 		2.2
(-2.4)
A 		8
(2)
A 		8
avr 19
(3) 		1.9
(-3) 		4.2
(-2.2) 		3.8
(-2.3) 		2.7
(-2.7) 		7.2
(-1.1) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.6
(-2.9)
A 		0.5
(-3)
A 		1.2
(-2.4)
A 		7.3
(3)
A 		7
B 2.5
(-1.8)
A 		3.2
(-1.4)
A 		0.3
(-3)
A 		11.2
(3)
A 		11
C 1.1
(-2.3)
A 		0.6
(-2.7)
A 		0.2
(-3)
A 		7.5
(3)
P 		7
avr 1.4
(-2.4) 		1.4
(-2.4) 		0.6
(-3) 		8.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 5.1
(3)
A 		0.4
(-2.8)
A 		1.7
(-1.2)
A 		0.2
(-3)
A 		1.6
(-1.3)
A 		0.4
(-2.8)
A 		5
B 9.7
(3)
A 		0.8
(-2.7)
A 		0.8
(-2.7)
A 		0.3
(-3)
A 		0.3
(-3)
A 		4.4
(-0.4)
A 		9
C 0.5
(-2.7)
A 		0.7
(-2.2)
A 		0.4
(-3)
A 		1.9
(0.9)
A 		0.7
(-2.2)
A 		2.7
(3)
A 		2
avr 5.1
(3) 		0.6
(-3) 		1
(-2.5) 		0.8
(-2.7) 		0.9
(-2.6) 		2.5
(-0.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185052_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10139
Sequence Type Exemplar sequence
Representative Public ID Y116A8A.1 NCBI
Target Description Y116A8A.1 /REP_DB=WormBase Gene ID /WP=CE23305 /TR=Q9U2W4 /GB=CAB55161.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070589 NCBI Caenorhabditis elegans Y116A8A.1 (Y116A8A.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000018656 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16802040:16804039:1 11/11 None
Y116A8A.1 ENSEMBL cdna:known chromosome:CEL140:IV:16802040:16804039:1 gene:Y116A8A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16802045-16804045(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8A.1
Entrez Gene 190982 Entrez gene
SwissProt Q9U2W4 EMBL-EBI
WormBase CE23305 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55161 Hypothetical protein Y116A8A.1 [Caenorhabditis elegans] ref|NP_502990.1| Y116A8A.1 [Caenorhabditis elegans] 2.0E-96
blast CAB55165 Hypothetical protein Y116A8A.3 [Caenorhabditis elegans] ref|NP_502991.1| Y116A8A.3 [Caenorhabditis elegans] 1.0E-74
blast CAB02970 Hypothetical protein F17B5.2 [Caenorhabditis elegans] ref|NP_493309.1| F17B5.2 [Caenorhabditis elegans] 5.0E-40
Sequence
Target Sequence 
>C. ELEGANS:185052_AT
atgttacatttgaccgcaaactcgtgtctaatcggtcattttatcgattacggtagcaaa
tattttttatcgttcacattttctattaatatactcaaaagttgtcaaataatagttttc
gcggtgaatcctgttaatcctgtagtagcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTTACATTTGACCGCAAACTCGT 678 45 13 Antisense
TTGACCGCAAACTCGTGTCTAATCG 359 703 22 Antisense
AACTCGTGTCTAATCGGTCATTTTA 657 141 31 Antisense
TCGGTCATTTTATCGATTACGGTAG 473 605 44 Antisense
GATTACGGTAGCAAATATTTTTTAT 551 427 58 Antisense
TATTTTTTATCGTTCACATTTTCTA 308 663 73 Antisense
GTTCACATTTTCTATTAATATACTC 226 445 84 Antisense
GTTGTCAAATAATAGTTTTCGCGGT 398 437 113 Antisense
AATAGTTTTCGCGGTGAATCCTGTT 688 171 123 Antisense
TCGCGGTGAATCCTGTTAATCCTGT 217 599 131 Antisense
TCCTGTTAATCCTGTAGTAGCATCA 511 593 141 Antisense
Sequence Source Affymetrix Proprietary Database