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[185051_at]

Description F09E10.7 /REP_DB=WormBase Gene ID /WP=CE04343 /TR=Q19251 /GB=AAB52484.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 02      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 41      6grp_total > 33      4grp_total > 54      6grp_high1_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 821
1 2 3 4 range
A 984.8
(3)
P 		641.5
(-0.5)
P 		598.3
(-0.9)
P 		395.3
(-3)
P 		590
B 1157.9
(3)
P 		669.9
(-0.6)
P 		558.1
(-1.4)
P 		337.2
(-3)
P 		821
C 989.8
(3)
P 		468.6
(-2.3)
P 		503.8
(-2)
P 		401.2
(-3)
P 		589
avr 1044.2
(3) 		593.3
(-1.1) 		553.4
(-1.4) 		377.9
(-3) 		666

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 871.6
(3)
P 		682.9
(0.9)
P 		870.2
(3)
P 		585
(-0.2)
P 		522.1
(-1)
P 		341.5
(-3)
P 		530
B 784.9
(1.3)
P 		667.8
(0)
P 		949
(3)
P 		497.2
(-1.7)
P 		472.3
(-2)
P 		377.1
(-3)
P 		572
C 785
(3)
P 		739
(2.4)
P 		732.5
(2.3)
P 		601.8
(0.5)
P 		344.5
(-3)
P 		611.9
(0.6)
P 		441
avr 813.8
(2.5) 		696.6
(0.7) 		850.6
(3) 		561.3
(-1.3) 		446.3
(-3) 		443.5
(-3) 		407
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 358.6
(3)
P 		139.2
(-1.4)
P 		156.4
(-1)
P 		57.9
(-3)
P 		301
B 369.2
(3)
P 		165.5
(-1.1)
P 		129.3
(-1.8)
P 		71.8
(-3)
P 		297
C 327.6
(3)
P 		134.7
(-1.5)
P 		175.6
(-0.5)
P 		67.7
(-3)
P 		260
avr 351.8
(3) 		146.5
(-1.3) 		153.8
(-1.2) 		65.8
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 160.7
(-0.1)
P 		242.9
(3)
P 		189.5
(1)
P 		148.4
(-0.5)
P 		157.5
(-0.2)
P 		83.1
(-3)
P 		160
B 273.1
(3)
P 		222.3
(0.8)
P 		230.4
(1.2)
P 		131.7
(-3)
P 		191.9
(-0.4)
P 		140.6
(-2.6)
P 		141
C 291
(3)
P 		225.5
(0.8)
P 		186.4
(-0.5)
P 		121
(-2.7)
P 		111.5
(-3)
P 		204.8
(0.1)
P 		180
avr 241.6
(3) 		230.2
(2.4) 		202.1
(0.8) 		133.7
(-3) 		153.6
(-1.9) 		142.8
(-2.5) 		108
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185051_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18476
Sequence Type Exemplar sequence
Representative Public ID F09E10.7 NCBI
Target Description F09E10.7 /REP_DB=WormBase Gene ID /WP=CE04343 /TR=Q19251 /GB=AAB52484.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029374(11), NM_001029375(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029374 NCBI Caenorhabditis elegans F09E10.7a (F09E10.7) mRNA, complete cds. 11/11 None
NM_001029375 NCBI Caenorhabditis elegans F09E10.7b (F09E10.7) mRNA, complete cds. 10/11 None
SNAP00000026364 ENSEMBL cdna:SNAP chromosome:CEL140:X:1500344:1501642:-1 11/11 None
GENEFINDER00000026369 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1500344:1501451:-1 11/11 None
F09E10.7a.1 ENSEMBL cdna:known chromosome:CEL140:X:1500192:1501832:-1 gene:F09E10.7 11/11 None
F09E10.7b ENSEMBL cdna:known chromosome:CEL140:X:1500315:1500837:-1 gene:F09E10.7 10/11 None
F09E10.7a.2 ENSEMBL cdna:known chromosome:CEL140:X:1500344:1500883:-1 gene:F09E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1500343-1501451(-) 100.0 100.0
Public Domain and Genome References
Ensembl F09E10.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15990 hypothetical protein F09E10.7 - Caenorhabditis elegans 2.0E-66
blast CAE70013 Hypothetical protein CBG16427 [Caenorhabditis briggsae] 5.0E-63
blast T15990 hypothetical protein F09E10.7 - Caenorhabditis elegans 7.0E-61
blast CAE70013 Hypothetical protein CBG16427 [Caenorhabditis briggsae] 2.0E-59
blast AAP82658 Hypothetical protein F09E10.7a [Caenorhabditis elegans] ref|NP_001024545.1| F09E10.7a [Caenorhabditis elegans] 3.0E-54
blast AAP82658 Hypothetical protein F09E10.7a [Caenorhabditis elegans] ref|NP_001024545.1| F09E10.7a [Caenorhabditis elegans] 4.0E-54
blast T15990 hypothetical protein F09E10.7 - Caenorhabditis elegans 4.0E-54
Sequence
Target Sequence 
>C. ELEGANS:185051_AT
gtcaagggccgtcagcaggactttatgaaggcgttcaacgccggagatgccgccggagct
gcatctgtctatgacccggatggttatttcatgccaaatggacgtaatccggtgaagggg
cgttctggaatcgaagcctacttcaaagaagacatggccgacggagttcagactgctcaa
atcatcaccgaggaggtgaacggaggtggcgactgggcgttcgaaagaggaagctatcac
ctggacggcactaaaggtcgcgaatcgggagcttatcttcagatctggaagaaggtcgaa
ggtgtctggcttatccataacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAGGGCCGTCAGCAGGACTTTA 473 455 85 Antisense
GGCGTTCAACGCCGGAGATGCCGCC 433 539 114 Antisense
CGGAGCTGCATCTGTCTATGACCCG 446 243 138 Antisense
GTAATCCGGTGAAGGGGCGTTCTGG 600 459 188 Antisense
GCGTTCTGGAATCGAAGCCTACTTC 181 289 204 Antisense
GACATGGCCGACGGAGTTCAGACTG 72 369 235 Antisense
GTTCAGACTGCTCAAATCATCACCG 645 443 250 Antisense
GTGAACGGAGGTGGCGACTGGGCGT 356 475 280 Antisense
GCTATCACCTGGACGGCACTAAAGG 685 303 317 Antisense
GTCGCGAATCGGGAGCTTATCTTCA 374 473 341 Antisense
AGGTGTCTGGCTTATCCATAACGAC 45 59 384 Antisense
Sequence Source Affymetrix Proprietary Database