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[185050_at]

Description K09H11.2 /REP_DB=WormBase Gene ID /WP=CE12050 /TR=O01588 /GB=AAB52262.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 27      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 7.8
(-3)
A 		10.8
(1.4)
A 		8.8
(-1.5)
A 		11.9
(3)
A 		4
B 9.5
(3)
A 		8.6
(-0.2)
A 		8.6
(-0.2)
A 		7.8
(-3)
A 		2
C 8.6
(-2)
A 		13.8
(1.4)
A 		7
(-3)
A 		16.3
(3)
A 		9
avr 8.6
(-2.2) 		11.1
(1.6) 		8.1
(-3) 		12
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 9.5
(1.4)
A 		8.5
(0.6)
A 		11.5
(3)
A 		4
(-3)
A 		6.4
(-1.1)
A 		5.2
(-2)
A 		8
B 6.2
(-2.9)
A 		30.5
(3)
A 		14.7
(-0.8)
A 		5.7
(-3)
A 		10.2
(-1.9)
A 		9.3
(-2.1)
A 		25
C 11.7
(-2.1)
A 		57.3
(3)
A 		7.9
(-2.6)
A 		4.1
(-3)
A 		6.8
(-2.7)
A 		9.4
(-2.4)
A 		53
avr 9.1
(-2) 		32.1
(3) 		11.4
(-1.5) 		4.6
(-3) 		7.8
(-2.3) 		8
(-2.3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.8
(3)
A 		2.4
(0.8)
A 		2.3
(0.3)
A 		1.7
(-3)
A 		1
B 3
(3)
A 		2.1
(-1.2)
A 		2
(-1.6)
A 		1.7
(-3)
A 		1
C 2.8
(-1.5)
A 		4
(3)
A 		2.4
(-3)
A 		2.7
(-1.9)
A 		2
avr 2.9
(3) 		2.8
(2.3) 		2.2
(-1.7) 		2
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.7
(-0.9)
A 		3
(3)
A 		2.5
(1.5)
A 		1
(-3)
A 		1.9
(-0.3)
A 		1.3
(-2.1)
A 		2
B 2.1
(-2.6)
A 		10.1
(3)
A 		3.6
(-1.5)
A 		1.5
(-3)
A 		4.2
(-1.1)
A 		3.5
(-1.6)
A 		9
C 4.3
(-1.7)
A 		17.5
(3)
A 		2
(-2.6)
A 		0.8
(-3)
A 		2.2
(-2.5)
A 		3.1
(-2.2)
A 		17
avr 2.7
(-1.9) 		10.2
(3) 		2.7
(-1.9) 		1.1
(-3) 		2.8
(-1.9) 		2.6
(-2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185050_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11707
Sequence Type Exemplar sequence
Representative Public ID K09H11.2 NCBI
Target Description K09H11.2 /REP_DB=WormBase Gene ID /WP=CE12050 /TR=O01588 /GB=AAB52262.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K09H11.2 ENSEMBL cdna:pseudogene chromosome:CEL140:V:5733907:5737190:1 gene:K09H11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
K09H11.8 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5733906-5736293(+) 100.0 100.0
Public Domain and Genome References
Ensembl K09H11.2
Sequence
Target Sequence 
>C. ELEGANS:185050_AT
tacgtgttgcgggctctcattaaaaaggaaggacaattgagcatattctacaaattatgc
atctcaaagtccatatgcaatctgatcacttgcttcacgtttttggtctggtcaacgcct
tgcacctttttaaatttctattacctcccctactgggcaaatgtattctggggacaagtt
gctggatggggagcatatattacgggaatcttcattcaaatctgtctatctttaaatcgt
cttactgtcacttatttcccattttcatcaaatggaagtaacaatcttctgaacatgaac
acttatcagcaagcaatgttcataacacgaagtgagaatctttccaaaaaaggccgtttg
atgtttgcacagagcgtcactcaggattgcttgcacatgatcgacatgctcgcatgccaa
gtcatttacaagttcaacgacgctctctggttccagttcatttgcatgtccggcgtttgg
ctcacaattcatgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACGTGTTGCGGGCTCTCATTAAAA 372 647 142 Antisense
CAATCTGATCACTTGCTTCACGTTT 398 181 219 Antisense
GCTTCACGTTTTTGGTCTGGTCAAC 444 303 233 Antisense
TCAACGCCTTGCACCTTTTTAAATT 248 615 253 Antisense
ATTACCTCCCCTACTGGGCAAATGT 583 11 281 Antisense
TACTGTCACTTATTTCCCATTTTCA 626 647 384 Antisense
GAGCGTCACTCAGGATTGCTTGCAC 374 387 513 Antisense
ACATGCTCGCATGCCAAGTCATTTA 364 107 545 Antisense
TACAAGTTCAACGACGCTCTCTGGT 33 643 568 Antisense
TCTGGTTCCAGTTCATTTGCATGTC 703 607 587 Antisense
GGCGTTTGGCTCACAATTCATGTTT 74 541 613 Antisense
Sequence Source Affymetrix Proprietary Database