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[185049_at]

Description Y9C12A.1 /REP_DB=WormBase Gene ID /WP=CE24699 /TR=Q9N4P4 /GB=AAF60923.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_high_8_8 > 12      6grp_highest_nonorm > 90      6grp_total > 22      4grp_total > 04      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 139
(-1.6)
P 		96.4
(-3)
A 		102.3
(-2.8)
A 		282.2
(3)
P 		186
B 180
(-0.9)
P 		132.8
(-2.4)
P 		116.1
(-3)
P 		297.4
(3)
P 		181
C 138.5
(-1.7)
P 		116.1
(-2.3)
A 		92.9
(-3)
P 		306
(3)
P 		213
avr 152.5
(-1.5) 		115.1
(-2.6) 		103.8
(-3) 		295.2
(3) 		191

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 168.6
(3)
P 		168.7
(3)
P 		155
(1.4)
P 		148.3
(0.7)
P 		163.2
(2.4)
P 		116.2
(-3)
P 		53
B 179.2
(3)
P 		175.3
(2.4)
P 		139.3
(-3)
P 		168.1
(1.3)
P 		151.6
(-1.2)
P 		156.1
(-0.5)
P 		40
C 137.6
(-1.8)
P 		166.1
(0.6)
P 		195.3
(3)
P 		167
(0.7)
P 		122.9
(-3)
P 		160.3
(0.1)
P 		72
avr 161.8
(1.1) 		170
(3) 		163.2
(1.4) 		161.1
(0.9) 		145.9
(-2.6) 		144.2
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 50.6
(3)
P 		20.9
(-3)
A 		26.8
(-1.8)
A 		41.3
(1.1)
P 		30
B 57.4
(2)
P 		32.8
(-2)
P 		26.9
(-3)
P 		63.4
(3)
P 		37
C 45.8
(1.2)
P 		33.4
(-2.7)
A 		32.4
(-3)
P 		51.6
(3)
P 		19
avr 51.3
(2.8) 		29
(-2.9) 		28.7
(-3) 		52.1
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 31.1
(-2.5)
P 		60
(3)
P 		33.8
(-2)
P 		37.6
(-1.2)
P 		49.3
(1)
P 		28.3
(-3)
P 		32
B 62.4
(3)
P 		58.4
(2.2)
P 		33.8
(-3)
P 		44.5
(-0.8)
P 		61.6
(2.8)
P 		58.2
(2.1)
P 		29
C 51
(2.2)
P 		50.7
(2.1)
P 		49.7
(1.8)
P 		33.6
(-3)
P 		39.8
(-1.1)
P 		53.7
(3)
P 		20
avr 48.2
(0.2) 		56.4
(3) 		39.1
(-2.8) 		38.6
(-3) 		50.2
(0.9) 		46.7
(-0.3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185049_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18059
Sequence Type Exemplar sequence
Representative Public ID Y9C12A.1 NCBI
Target Description Y9C12A.1 /REP_DB=WormBase Gene ID /WP=CE24699 /TR=Q9N4P4 /GB=AAF60923.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075740 NCBI Caenorhabditis elegans Y9C12A.1 (Y9C12A.1) mRNA, complete cds. 11/11 None
SNAP00000028022 ENSEMBL cdna:SNAP chromosome:CEL140:X:681141:682779:-1 10/11 None
GENEFINDER00000028023 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:681141:682779:-1 11/11 None
Y9C12A.1 ENSEMBL cdna:known chromosome:CEL140:X:681141:682779:-1 gene:Y9C12A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:681140-682779(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y9C12A.1
Entrez Gene 189424 Entrez gene
SwissProt Q9N4P4 EMBL-EBI
WormBase CE24699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60923 Hypothetical protein Y9C12A.1 [Caenorhabditis elegans] ref|NP_508141.1| Y9C12A.1 [Caenorhabditis elegans] 1.0E-141
blast AAF60923 Hypothetical protein Y9C12A.1 [Caenorhabditis elegans] ref|NP_508141.1| Y9C12A.1 [Caenorhabditis elegans] 1.0E-136
blast AAF60923 Hypothetical protein Y9C12A.1 [Caenorhabditis elegans] ref|NP_508141.1| Y9C12A.1 [Caenorhabditis elegans] 1.0E-125
blast CAE63632 Hypothetical protein CBG08128 [Caenorhabditis briggsae] 1.0E-114
blast CAE63632 Hypothetical protein CBG08128 [Caenorhabditis briggsae] 1.0E-109
blast CAE63632 Hypothetical protein CBG08128 [Caenorhabditis briggsae] 3.0E-99
blast XP_230296 PREDICTED: similar to hypothetical protein [Rattus norvegicus] 3.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508141.1 4 98-120,135-154,161-183,188-210
Y9C12A.1 4 98-120,135-154,161-183,188-210
SNAP00000028022 4 98-120,135-154,161-179,216-238
GENEFINDER00000028023 4 98-120,135-154,163-185,250-272
Sequence
Target Sequence 
>C. ELEGANS:185049_AT
cgagtcactgtatgttcgtctgccacgaggaatgtttgtatggaacaccttgaactcgct
gtattttctcctgattggtacaatttgcctagtcctaccccgtcttggcatatacctgga
tcacggaattgaacaaattccgccggaagccctagtcattgttcgctactatggcgtcac
tctagtttcattcggaattctcttcaagtttatattgcaacaacgagaaacgcgcgctga
tattgcacttcttttgctcgtcactgcggtttttcatataattgtacttatagtatcaac
ggcctctcatggattagtggcatggtggtcaggcactcttcgtctgttgctcattctggg
caacatcttctatcacgcatttgttgatgggcaaggaggcctccatcgccagttgatccg
tgtcattgaagactcttcgttcttgtttgcttcgccagttcaggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGTCACTGTATGTTCGTCTGCCA 124 249 258 Antisense
TCGCTGTATTTTCTCCTGATTGGTA 539 597 313 Antisense
CCCGTCTTGGCATATACCTGGATCA 165 261 356 Antisense
TGTTCGCTACTATGGCGTCACTCTA 421 555 417 Antisense
GAGAAACGCGCGCTGATATTGCACT 195 393 482 Antisense
GATATTGCACTTCTTTTGCTCGTCA 402 427 496 Antisense
TTGCTCGTCACTGCGGTTTTTCATA 504 703 511 Antisense
GTATCAACGGCCTCTCATGGATTAG 170 451 550 Antisense
TTCGTCTGTTGCTCATTCTGGGCAA 609 695 596 Antisense
TTCTGGGCAACATCTTCTATCACGC 675 693 611 Antisense
TTGTTTGCTTCGCCAGTTCAGGAAA 537 707 700 Antisense
Sequence Source Affymetrix Proprietary Database