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[185048_at]

Description T08E11.1 /REP_DB=WormBase Gene ID /WP=CE19568 /TR=O76644 /GB=AAC26320.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 51      6grp_total > 51      4grp_total > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 53.7
(-0.9)
P 		14.6
(-3)
A 		37.6
(-1.7)
A 		123.9
(3)
P 		109
B 52.9
(3)
P 		50.2
(1.7)
A 		40.2
(-3)
A 		49.1
(1.2)
P 		13
C 49.7
(-3)
M 		72.5
(1)
A 		57.1
(-1.7)
A 		84.3
(3)
P 		35
avr 52.1
(-2) 		45.8
(-2.9) 		45
(-3) 		85.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 69.1
(-0.7)
A 		71.7
(-0.6)
P 		140.1
(3)
P 		96
(0.7)
P 		44.6
(-2)
A 		25
(-3)
A 		115
B 65.7
(-1.3)
P 		78.1
(-0.2)
P 		115.7
(3)
P 		101.7
(1.8)
P 		51
(-2.5)
P 		45.5
(-3)
P 		70
C 50.1
(-2.9)
P 		78.4
(-0.8)
P 		130.5
(3)
P 		103
(1)
P 		49.2
(-3)
P 		53.3
(-2.7)
P 		81
avr 61.6
(-1.6) 		76.1
(-0.6) 		128.8
(3) 		100.2
(1) 		48.3
(-2.5) 		41.3
(-3) 		88
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.5
(3)
P 		3.2
(-3)
A 		9.8
(-0.6)
A 		18.1
(2.5)
P 		16
B 16.9
(3)
P 		12.4
(-0.6)
A 		9.3
(-3)
A 		10.5
(-2.1)
P 		8
C 16.5
(-0.9)
M 		20.9
(3)
A 		19.9
(2.1)
A 		14.2
(-3)
P 		7
avr 17.6
(3) 		12.2
(-3) 		13
(-2.1) 		14.3
(-0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 12.7
(-1.4)
A 		25.5
(1.8)
P 		30.5
(3)
P 		24.4
(1.5)
P 		13.5
(-1.2)
A 		6.1
(-3)
A 		24
B 22.9
(0.2)
P 		26
(1.9)
P 		28.1
(3)
P 		26.9
(2.4)
P 		20.7
(-1)
P 		17
(-3)
P 		11
C 18.6
(-2.1)
P 		23.9
(-0.2)
P 		33.2
(3)
P 		20.7
(-1.3)
P 		15.9
(-3)
P 		17.9
(-2.3)
P 		17
avr 18.1
(-1.4) 		25.1
(1) 		30.6
(3) 		24
(0.7) 		16.7
(-1.9) 		13.7
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185048_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5915
Sequence Type Exemplar sequence
Representative Public ID T08E11.1 NCBI
Target Description T08E11.1 /REP_DB=WormBase Gene ID /WP=CE19568 /TR=O76644 /GB=AAC26320.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061689(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061689 NCBI Caenorhabditis elegans T08E11.1 (T08E11.1) mRNA, complete cds. 11/11 None
GENEFINDER00000007517 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1838765:1840213:1 11/11 None
T08E11.1 ENSEMBL cdna:known chromosome:CEL140:II:1836515:1840295:1 gene:T08E11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007506 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1836513-1840212(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08E11.1
Entrez Gene 188287 Entrez gene
SwissProt O76644 EMBL-EBI
WormBase CE30167 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26320 Hypothetical protein T08E11.1 [Caenorhabditis elegans] ref|NP_494090.2| T08E11.1 [Caenorhabditis elegans] 0.0
blast AAB71074 Hypothetical protein ZK250.5a [Caenorhabditis elegans] ref|NP_001022518.1| ZK250.5a [Caenorhabditis elegans] 1.0E-145
blast AAY43980 Hypothetical protein ZK250.5b [Caenorhabditis elegans] ref|NP_001022519.1| ZK250.5b [Caenorhabditis elegans] 1.0E-145
blast AAB71074 Hypothetical protein ZK250.5a [Caenorhabditis elegans] ref|NP_001022518.1| ZK250.5a [Caenorhabditis elegans] 4.0E-91
blast AAY43980 Hypothetical protein ZK250.5b [Caenorhabditis elegans] ref|NP_001022519.1| ZK250.5b [Caenorhabditis elegans] 4.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.7E-32
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 5.6E-29
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 3.7E-32
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.7E-5
Sequence
Target Sequence 
>C. ELEGANS:185048_AT
aacgttccattttatctgattggcagttgagtggagatcaatttattgaaacgttgaata
gaactttcttctcgtgtggcaccttgtttccagtagagaagttcattttgacaacaatat
gtttgaaacaagctgcgctaacacttcaaaacgtagatcccgttacattaaaatcaattg
aacttcgatcaaattcatttctaaatattgtacaaccctttgatgacctcgcaagcttgg
agcaatgtaaaaatgcagatgaattgaagatggaaaattttcgagtgcaatgtggtcttg
agaagttgattcattttgcgaaagttgatataggactatattcaatttccctggaagatg
tcttatatctgaaagagaaattcctaatgtcttccaaattccgccagtttaaagcggcgt
ttcatgaaactgatgtcaataattcaattttcgaagttaacttcttgggagctccacgac
gcagagttgacgatattacaaatgtttcagaaggtcaacctagtgtgtggttctttccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTTCCATTTTATCTGATTGGCA 59 145 1283 Antisense
AATAGAACTTTCTTCTCGTGTGGCA 418 171 1339 Antisense
TGTGGCACCTTGTTTCCAGTAGAGA 292 553 1357 Antisense
CAAGCTGCGCTAACACTTCAAAACG 182 185 1411 Antisense
ATTGTACAACCCTTTGATGACCTCG 563 3 1489 Antisense
GAGAAATTCCTAATGTCTTCCAAAT 163 393 1657 Antisense
TCTTCCAAATTCCGCCAGTTTAAAG 92 617 1672 Antisense
CCAGTTTAAAGCGGCGTTTCATGAA 244 273 1686 Antisense
GAAGTTAACTTCTTGGGAGCTCCAC 609 333 1735 Antisense
AGCTCCACGACGCAGAGTTGACGAT 83 81 1752 Antisense
CAACCTAGTGTGTGGTTCTTTCCGT 496 185 1798 Antisense
Sequence Source Affymetrix Proprietary Database