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[185047_at]

Description F39H12.3 /REP_DB=WormBase Gene ID /WP=CE07210 /TR=Q20199 /GB=AAA83605.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 20      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 51      6grp_total > 33      4grp_total > 54      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 727.6
(3)
P 		651.6
(1.5)
P 		489.6
(-1.6)
P 		415
(-3)
P 		313
B 777.1
(3)
P 		475.3
(-1.5)
P 		539.4
(-0.6)
P 		378.7
(-3)
P 		398
C 690.4
(3)
P 		489.2
(-0.8)
P 		468.4
(-1.2)
P 		374.6
(-3)
P 		316
avr 731.7
(3) 		538.7
(-0.4) 		499.1
(-1.1) 		389.4
(-3) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 514
1 2 3 4 5 6 range
A 635.2
(2.8)
P 		645.9
(3)
P 		626.2
(2.7)
P 		607.4
(2.3)
P 		301.9
(-3)
P 		369.4
(-1.8)
P 		344
B 632.6
(2.1)
P 		491.1
(-0.6)
P 		676.8
(3)
P 		509.2
(-0.2)
P 		424.2
(-1.9)
P 		366.6
(-3)
P 		310
C 768.1
(2.4)
P 		566.8
(-0.4)
P 		815.5
(3)
P 		589.8
(-0)
P 		466.8
(-1.7)
P 		370.8
(-3)
P 		445
avr 678.6
(2.5) 		567.9
(0.5) 		706.2
(3) 		568.8
(0.6) 		397.6
(-2.5) 		368.9
(-3) 		337
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 264.9
(3)
P 		141.4
(-0.6)
P 		128
(-1)
P 		60.7
(-3)
P 		204
B 247.8
(3)
P 		117.4
(-1.7)
P 		125
(-1.4)
P 		80.7
(-3)
P 		167
C 228.6
(3)
P 		140.6
(-0.2)
P 		163.3
(0.6)
P 		63.2
(-3)
P 		165
avr 247.1
(3) 		133.1
(-0.8) 		138.8
(-0.6) 		68.2
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 117.1
(-1.8)
P 		229.7
(3)
P 		136.4
(-1)
P 		154
(-0.2)
P 		91.1
(-2.9)
P 		89.9
(-3)
P 		140
B 220.1
(3)
P 		163.5
(-1)
P 		164.4
(-0.9)
P 		134.9
(-3)
P 		172.3
(-0.4)
P 		136.7
(-2.9)
P 		85
C 284.7
(3)
P 		172.9
(-1)
P 		207.5
(0.2)
P 		118.6
(-3)
P 		151
(-1.8)
P 		124.1
(-2.8)
P 		166
avr 207.3
(3) 		188.7
(1.8) 		169.4
(0.5) 		135.8
(-1.7) 		138.1
(-1.6) 		116.9
(-3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185047_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18070
Sequence Type Exemplar sequence
Representative Public ID F39H12.3 NCBI
Target Description F39H12.3 /REP_DB=WormBase Gene ID /WP=CE07210 /TR=Q20199 /GB=AAA83605.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075764(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075764 NCBI Caenorhabditis elegans F39H12.3 (F39H12.3) mRNA, complete cds. 11/11 None
GENEFINDER00000043082 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:838305:841489:-1 11/11 None
SNAP00000043078 ENSEMBL cdna:SNAP chromosome:CEL140:X:838677:841489:-1 11/11 None
F39H12.3 ENSEMBL cdna:known chromosome:CEL140:X:838677:841489:-1 gene:F39H12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:838676-841489(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39H12.3
Entrez Gene 185505 Entrez gene
SwissProt Q20199 EMBL-EBI
WormBase CE07210 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8603 cAMP-dependent protein kinase regulator activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA83605 Hypothetical protein F39H12.3 [Caenorhabditis elegans] ref|NP_508165.1| F39H12.3 [Caenorhabditis elegans] 1.0E-104
blast CAE63612 Hypothetical protein CBG08105 [Caenorhabditis briggsae] 1.0E-100
blast AAA83605 Hypothetical protein F39H12.3 [Caenorhabditis elegans] ref|NP_508165.1| F39H12.3 [Caenorhabditis elegans] 3.0E-99
blast CAE63612 Hypothetical protein CBG08105 [Caenorhabditis briggsae] 2.0E-92
blast EAA09123 ENSANGP00000013043 [Anopheles gambiae str. PEST] ref|XP_313696.2| ENSANGP00000013043 [Anopheles gambiae str. PEST] 6.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR003117 EMBL-EBI cAMP-dependent protein kinase regulator, type II PKA R subunit 3.0E-16
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 4.0E-6
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 6.4E-8
Sequence
Target Sequence 
>C. ELEGANS:185047_AT
ccacgatcttcgcccaattttggaagcgttggcgcgtgaagtactccgaagtcaaccatc
ggatgtggccgagtttggccacatgtttttcgatgagtacttgaaacatcgcagagaaaa
caggaacattctaaaggatccagcggcttacgaagttttccgtgctgatctccagaagaa
gtttgctgaagttgagcgaccagccagtccaatggacactgccgcaactaaaattcaagc
cgctttcaaaggacacttggtccgcgctcacccagaaaagtatggaatgagcactagaac
ttcttcttctgagaagcttgattctgccaacaacaagaaagatcaaaagcgtcattccgt
gggaggttacaccattgatgtggacactccggaagacagagccgcgaccaagattcaatc
tgaaattcgcggatttcttactcgcaagcacgttgataagatgaagaaggaggatactga
cgcggcaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACGATCTTCGCCCAATTTTGGAA 183 275 42 Antisense
GTTGGCGCGTGAAGTACTCCGAAGT 650 435 69 Antisense
GCCGAGTTTGGCCACATGTTTTTCG 308 283 109 Antisense
GATCCAGCGGCTTACGAAGTTTTCC 433 415 178 Antisense
GTTTTCCGTGCTGATCTCCAGAAGA 225 449 196 Antisense
TGAAGTTGAGCGACCAGCCAGTCCA 436 575 228 Antisense
TCAAAGGACACTTGGTCCGCGCTCA 691 627 287 Antisense
GAGCACTAGAACTTCTTCTTCTGAG 9 391 330 Antisense
AGAGCCGCGACCAAGATTCAATCTG 528 69 439 Antisense
GATTTCTTACTCGCAAGCACGTTGA 238 427 473 Antisense
GAAGGAGGATACTGACGCGGCAACT 256 335 507 Antisense
Sequence Source Affymetrix Proprietary Database