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[185046_at]

Description F19F10.3 /REP_DB=WormBase Gene ID /WP=CE09483 /TR=O01516 /GB=AAB52281.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 84      4grp_high_8_8 > 14      6grp_total > 74      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 688
1 2 3 4 range
A 282.6
(-3)
A 		428.6
(-1.5)
P 		305.7
(-2.8)
A 		873.8
(3)
P 		591
B 266.7
(-3)
M 		343.9
(-1.8)
P 		346.9
(-1.8)
P 		664.8
(3)
P 		398
C 256.1
(-3)
P 		390.2
(-1.8)
P 		316.6
(-2.5)
P 		944.4
(3)
P 		688
avr 268.5
(-3) 		387.6
(-1.7) 		323.1
(-2.4) 		827.7
(3) 		559

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 654
1 2 3 4 5 6 range
A 229.2
(-3)
A 		433.9
(-1.1)
P 		883.6
(3)
P 		821.5
(2.4)
P 		711.1
(1.4)
P 		640
(0.8)
P 		654
B 318.3
(-3)
P 		514.7
(-0.8)
P 		836
(2.8)
P 		748.8
(1.8)
P 		775.2
(2.1)
P 		857.5
(3)
P 		539
C 279.6
(-3)
P 		523.9
(-0.5)
P 		497.9
(-0.8)
P 		698.5
(1.3)
P 		702.1
(1.3)
P 		865.8
(3)
P 		586
avr 275.7
(-3) 		490.8
(-0.5) 		739.2
(2.4) 		756.3
(2.6) 		729.5
(2.3) 		787.8
(3) 		512
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 102.9
(-0.1)
A 		93
(-1.4)
P 		79.9
(-3)
A 		127.9
(3)
P 		48
B 85.1
(-2.5)
M 		84.9
(-2.6)
P 		80.4
(-3)
P 		141.7
(3)
P 		61
C 84.8
(-3)
P 		112.2
(-0.8)
P 		110.4
(-0.9)
P 		159.2
(3)
P 		74
avr 90.9
(-2.9) 		96.7
(-2.3) 		90.2
(-3) 		142.9
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 42.2
(-3)
A 		154.3
(0.9)
P 		192.4
(2.2)
P 		208.4
(2.8)
P 		214.6
(3)
P 		155.8
(1)
P 		172
B 110.8
(-3)
P 		171.3
(-1.3)
P 		203
(-0.4)
P 		198.3
(-0.5)
P 		315
(2.9)
P 		319.7
(3)
P 		209
C 103.6
(-3)
P 		159.8
(-1.2)
P 		126.7
(-2.3)
P 		140.5
(-1.8)
P 		227.2
(1)
P 		289.8
(3)
P 		186
avr 85.5
(-3) 		161.8
(-0.3) 		174
(0.1) 		182.4
(0.4) 		252.3
(2.9) 		255.1
(3) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185046_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11437
Sequence Type Exemplar sequence
Representative Public ID F19F10.3 NCBI
Target Description F19F10.3 /REP_DB=WormBase Gene ID /WP=CE09483 /TR=O01516 /GB=AAB52281.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072544(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072544 NCBI Caenorhabditis elegans F19F10.3 (F19F10.3) mRNA, complete cds. 11/11 None
SNAP00000016025 ENSEMBL cdna:SNAP chromosome:CEL140:V:7553826:7555222:1 10/11 None
GENEFINDER00000016037 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7553910:7555222:1 10/11 None
F19F10.3 ENSEMBL cdna:known chromosome:CEL140:V:7554827:7555222:1 gene:F19F10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7554827-7555223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19F10.3
Entrez Gene 184685 Entrez gene
SwissProt O01516 EMBL-EBI
WormBase CE09483 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52281 Hypothetical protein F19F10.3 [Caenorhabditis elegans] ref|NP_504945.1| F19F10.3 [Caenorhabditis elegans] 2.0E-70
blast AAB52281 Hypothetical protein F19F10.3 [Caenorhabditis elegans] ref|NP_504945.1| F19F10.3 [Caenorhabditis elegans] 6.0E-61
blast AAB52281 Hypothetical protein F19F10.3 [Caenorhabditis elegans] ref|NP_504945.1| F19F10.3 [Caenorhabditis elegans] 9.0E-61
blast CAA94356 Hypothetical protein R102.2 [Caenorhabditis elegans] ref|NP_501975.1| R102.2 [Caenorhabditis elegans] 2.0E-43
blast CAA94356 Hypothetical protein R102.2 [Caenorhabditis elegans] ref|NP_501975.1| R102.2 [Caenorhabditis elegans] 4.0E-41
blast CAA94356 Hypothetical protein R102.2 [Caenorhabditis elegans] ref|NP_501975.1| R102.2 [Caenorhabditis elegans] 6.0E-41
blast CAE60761 Hypothetical protein CBG04448 [Caenorhabditis briggsae] 8.0E-41
Sequence
Target Sequence 
>C. ELEGANS:185046_AT
aaattgtctttcagctcttgaagaattcaaaaagctcaggaatgagataaaagagcttaa
aaatgcaggcaaacacgaagagtttgtcgaaagattcgccgccaaggacgctaccttcct
cgcaccattccacgacccagtgaccgctgcagattcaattagcttggccaaaagtgacga
tcttgcacctcttgtcaaagctgactttgagatgacaactgacgaggtcacacaaattgg
agacgttgtcatcgaacggaacacaattattgtcaagcttccatctggtgacaaaactgg
atgggctttgagtgtctgggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGTCTTTCAGCTCTTGAAGAA 485 113 21 Antisense
GTTTGTCGAAAGATTCGCCGCCAAG 684 449 102 Antisense
CCAGTGACCGCTGCAGATTCAATTA 139 273 157 Antisense
GCAGATTCAATTAGCTTGGCCAAAA 511 311 169 Antisense
AAAGTGACGATCTTGCACCTCTTGT 608 121 191 Antisense
TCTTGCACCTCTTGTCAAAGCTGAC 192 619 201 Antisense
GAGATGACAACTGACGAGGTCACAC 98 397 229 Antisense
GAGACGTTGTCATCGAACGGAACAC 557 393 260 Antisense
AATTATTGTCAAGCTTCCATCTGGT 393 175 285 Antisense
AGCTTCCATCTGGTGACAAAACTGG 302 79 296 Antisense
TGGATGGGCTTTGAGTGTCTGGGTC 90 551 318 Antisense
Sequence Source Affymetrix Proprietary Database