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[185045_at]

Description F39H12.2 /REP_DB=WormBase Gene ID /WP=CE07209 /TR=Q20197 /GB=AAA83603.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 153.3
(3)
P 		95.8
(-1.5)
A 		86.8
(-2.2)
A 		76
(-3)
A 		77
B 125.5
(2.1)
P 		50.5
(-2.4)
A 		41.1
(-3)
A 		140.4
(3)
P 		99
C 170
(3)
P 		34.6
(-3)
A 		49.7
(-2.3)
A 		86.9
(-0.7)
P 		135
avr 149.6
(3) 		60.3
(-2.9) 		59.2
(-3) 		101.1
(-0.2) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 126.2
(3)
P 		82.7
(0.8)
A 		115.1
(2.4)
P 		75.3
(0.4)
A 		26.7
(-2)
A 		7.7
(-3)
A 		119
B 108.1
(3)
P 		90.5
(1.7)
A 		107.1
(2.9)
A 		94.2
(2)
P 		28.2
(-3)
A 		50.9
(-1.3)
A 		80
C 122
(3)
P 		96.5
(1)
A 		65.1
(-1.4)
A 		64.3
(-1.5)
A 		45.4
(-2.9)
A 		44.7
(-3)
A 		77
avr 118.8
(3) 		89.9
(1) 		95.8
(1.4) 		77.9
(0.1) 		33.4
(-3) 		34.4
(-2.9) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 55.8
(3)
P 		20.8
(-1.7)
A 		22.7
(-1.4)
A 		11.1
(-3)
A 		45
B 40
(3)
P 		12.5
(-2.4)
A 		9.5
(-3)
A 		29.9
(1)
P 		31
C 56.3
(3)
P 		10
(-3)
A 		17.3
(-2.1)
A 		14.6
(-2.4)
P 		46
avr 50.7
(3) 		14.4
(-3) 		16.5
(-2.7) 		18.5
(-2.3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 23.3
(1.7)
P 		29.4
(3)
A 		25.1
(2.1)
P 		19.1
(0.8)
A 		8.1
(-1.6)
A 		1.9
(-3)
A 		28
B 37.6
(3)
P 		30.1
(1.3)
A 		26
(0.3)
A 		25
(0.1)
P 		11.5
(-3)
A 		19
(-1.3)
A 		26
C 45.2
(3)
P 		29.4
(0.1)
A 		16.6
(-2.3)
A 		12.9
(-3)
A 		14.7
(-2.7)
A 		15
(-2.6)
A 		32
avr 35.4
(3) 		29.6
(1.6) 		22.6
(-0.2) 		19
(-1.1) 		11.4
(-3) 		12
(-2.9) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185045_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18418
Sequence Type Exemplar sequence
Representative Public ID F39H12.2 NCBI
Target Description F39H12.2 /REP_DB=WormBase Gene ID /WP=CE07209 /TR=Q20197 /GB=AAA83603.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075762(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075762 NCBI Caenorhabditis elegans F39H12.2 (F39H12.2) mRNA, complete cds. 11/11 None
SNAP00000043076 ENSEMBL cdna:SNAP chromosome:CEL140:X:833039:833497:1 9/11 None
GENEFINDER00000043083 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:833077:833497:1 11/11 None
F39H12.2 ENSEMBL cdna:known chromosome:CEL140:X:833077:833497:1 gene:F39H12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:833076-833497(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F39H12.2
Entrez Gene 185504 Entrez gene
SwissProt Q20197 EMBL-EBI
WormBase CE07209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83603 Hypothetical protein F39H12.2 [Caenorhabditis elegans] ref|NP_508163.1| F39H12.2 [Caenorhabditis elegans] 4.0E-53
blast AAA83603 Hypothetical protein F39H12.2 [Caenorhabditis elegans] ref|NP_508163.1| F39H12.2 [Caenorhabditis elegans] 7.0E-43
blast CAE63614 Hypothetical protein CBG08107 [Caenorhabditis briggsae] 8.0E-40
blast CAE63614 Hypothetical protein CBG08107 [Caenorhabditis briggsae] 3.0E-36
Sequence
Target Sequence 
>C. ELEGANS:185045_AT
tgaaaactcgggcttcttctcgatactttttctattttcatgcttaccagtgaatagtgt
ttctgtcgcaccggaaagcgcatatgtcttgacttcttccgaggatggcacttttatcgt
ttcgaagcttcacacaagaaaaccacatgcttatcaagttgaataccgtttctctgacag
cgatccgtccaacgtcatcatgggagcgcaattcacaaatggacgcgggagtgcaattgc
aattgccgcatttgatagcaacgtcttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAACTCGGGCTTCTTCTCGATA 305 571 18 Antisense
TTTTCTATTTTCATGCTTACCAGTG 92 677 45 Antisense
GTGAATAGTGTTTCTGTCGCACCGG 622 481 67 Antisense
AGCGCATATGTCTTGACTTCTTCCG 502 81 94 Antisense
GACTTCTTCCGAGGATGGCACTTTT 492 369 108 Antisense
GGCACTTTTATCGTTTCGAAGCTTC 560 535 124 Antisense
AATACCGTTTCTCTGACAGCGATCC 710 171 179 Antisense
ATCCGTCCAACGTCATCATGGGAGC 244 35 200 Antisense
GTCATCATGGGAGCGCAATTCACAA 660 467 211 Antisense
AATGGACGCGGGAGTGCAATTGCAA 699 161 235 Antisense
GCCGCATTTGATAGCAACGTCTTGG 270 285 262 Antisense
Sequence Source Affymetrix Proprietary Database