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[185044_at]

Description C05E11.6 /REP_DB=WormBase Gene ID /WP=CE03936 /TR=Q17662 /GB=AAA96189.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_high_8_8 > 06      6grp_total > 55      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1450
1 2 3 4 range
A 139.4
(-2.6)
P 		67.5
(-3)
A 		61.2
(-3)
A 		1219.5
(3)
P 		1158
B 155.1
(-2.6)
P 		75.3
(-3)
A 		68.6
(-3)
A 		1500.6
(3)
P 		1432
C 153.8
(-2.5)
P 		94.9
(-2.8)
P 		51.1
(-3)
P 		1268.2
(3)
P 		1217
avr 149.4
(-2.6) 		79.2
(-2.9) 		60.3
(-3) 		1329.4
(3) 		1269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 57.1
(-3)
A 		79.9
(-1.1)
P 		116.9
(2.1)
P 		102
(0.8)
A 		104.2
(1)
P 		127.9
(3)
P 		71
B 131
(3)
P 		88.1
(-2.7)
P 		98.8
(-1.3)
P 		106.2
(-0.3)
P 		86
(-3)
P 		112.2
(0.5)
P 		45
C 112.5
(-1.3)
P 		153.1
(3)
P 		119.1
(-0.6)
P 		96.3
(-3)
P 		108.7
(-1.7)
P 		105.3
(-2)
P 		57
avr 100.2
(-2.8) 		107
(-0.1) 		111.6
(1.6) 		101.5
(-2.3) 		99.6
(-3) 		115.1
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 50.8
(-1.7)
P 		14.7
(-3)
A 		16
(-3)
A 		178.5
(3)
P 		164
B 49.5
(-2.3)
P 		18.6
(-2.9)
A 		15.9
(-3)
A 		319.8
(3)
P 		304
C 50.9
(-2)
P 		27.3
(-2.7)
P 		17.8
(-3)
P 		213.8
(3)
P 		196
avr 50.4
(-2.1) 		20.2
(-2.9) 		16.6
(-3) 		237.4
(3) 		221

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 10.5
(-3)
A 		28.4
(2.1)
P 		25.5
(1.3)
P 		25.9
(1.4)
A 		31.4
(3)
P 		31.1
(2.9)
P 		21
B 45.6
(3)
P 		29.3
(-1.5)
P 		24
(-3)
P 		28.1
(-1.9)
P 		35
(0.1)
P 		41.8
(1.9)
P 		22
C 41.7
(1.9)
P 		46.7
(3)
P 		30.3
(-0.6)
P 		19.4
(-3)
P 		35.2
(0.5)
P 		35.3
(0.5)
P 		27
avr 32.6
(1.2) 		34.8
(2.3) 		26.6
(-1.9) 		24.5
(-3) 		33.9
(1.9) 		36.1
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185044_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16937
Sequence Type Exemplar sequence
Representative Public ID C05E11.6 NCBI
Target Description C05E11.6 /REP_DB=WormBase Gene ID /WP=CE03936 /TR=Q17662 /GB=AAA96189.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076381(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076381 NCBI Caenorhabditis elegans C05E11.6 (C05E11.6) mRNA, complete cds. 9/11 None
GENEFINDER00000025340 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4562167:4562760:1 11/11 None
C05E11.6 ENSEMBL cdna:known chromosome:CEL140:X:4562167:4562809:1 gene:C05E11.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4562167-4562761(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E11.6
Entrez Gene 182273 Entrez gene
SwissProt Q17662 EMBL-EBI
WormBase CE35383 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA96189 Hypothetical protein C05E11.6 [Caenorhabditis elegans] ref|NP_508782.2| C05E11.6 [Caenorhabditis elegans] 3.0E-77
blast CAE68612 Hypothetical protein CBG14493 [Caenorhabditis briggsae] emb|CAE68610.1| Hypothetical protein CBG14491 [Caenorhabditis briggsae] 3.0E-38
blast AAA96189 Hypothetical protein C05E11.6 [Caenorhabditis elegans] ref|NP_508782.2| C05E11.6 [Caenorhabditis elegans] 8.0E-20
blast CAE70857 Hypothetical protein CBG17645 [Caenorhabditis briggsae] 2.0E-11
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508782.2 1 7-29
C05E11.6 1 7-29
GENEFINDER00000025340 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:185044_AT
tcaaaactgcctatctttctctgttggttttgattttggttctcatcagtttaacagatg
ctcatgcttcaagctggaaatcaattttaaattctgataagagaatggaaacaaaacaac
attcattggaatctatatttcgagtgaggcggacctacatagacgaaaatgaggtaggat
tctttgaaacagtgacgaaacatttttcatgggttagggttaaaatcacctgctttgttg
acttgaccagatatcacgctgctaaaacatctgagaatttcaaattgaatgaacaaacaa
tgtttgcagaactgcggctcgcacgagttggagatggtgcacacgataatggacagaata
tgcatgctctgccacgagctgcgatcacatttcgcaccgaacacgcgggtcgaatgtcgc
aaggactgttttcagaacgacacgtttcaatcatgcatgaaaatattttcgagagtaccg
tcgagacctgttcaacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAACTGCCTATCTTTCTCTGTT 415 629 26 Antisense
ACAGATGCTCATGCTTCAAGCTGGA 431 107 79 Antisense
GAGTGAGGCGGACCTACATAGACGA 79 401 167 Antisense
AATCACCTGCTTTGTTGACTTGACC 101 171 249 Antisense
GACTTGACCAGATATCACGCTGCTA 419 371 265 Antisense
AGAACTGCGGCTCGCACGAGTTGGA 554 73 333 Antisense
GAATATGCATGCTCTGCCACGAGCT 70 327 381 Antisense
CGAGCTGCGATCACATTTCGCACCG 428 249 400 Antisense
GAACACGCGGGTCGAATGTCGCAAG 658 347 424 Antisense
GAACGACACGTTTCAATCATGCATG 325 347 460 Antisense
GTACCGTCGAGACCTGTTCAACAGC 213 459 500 Antisense
Sequence Source Affymetrix Proprietary Database