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[185043_s_at]

Description Y56A3A.30 /REP_DB=WormBase Gene ID /WP=CE22595 /TR=Q9U234 /GB=CAB60506.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 31      4grp_high_8_8 > 04      6grp_highest_nonorm > 90      6grp_total > 46      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 242
1 2 3 4 range
A 131.2
(-2.9)
P 		125.8
(-3)
P 		126.9
(-3)
P 		346.6
(3)
P 		221
B 182.2
(0.9)
P 		143.2
(-1.1)
P 		104.3
(-3)
P 		224.2
(3)
P 		120
C 167.9
(-0.8)
P 		117.2
(-3)
P 		120
(-2.9)
P 		257.5
(3)
P 		140
avr 160.4
(-1.4) 		128.7
(-2.6) 		117.1
(-3) 		276.1
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 138.3
(0.2)
P 		151.1
(1.9)
P 		125.7
(-1.5)
P 		114.1
(-3)
P 		138.1
(0.2)
P 		159.7
(3)
P 		46
B 148.7
(3)
P 		110.1
(-1)
P 		141.4
(2.2)
P 		123.7
(0.4)
P 		90.9
(-3)
P 		119.6
(-0)
P 		58
C 100.2
(-3)
P 		199.4
(3)
P 		125.8
(-1.5)
P 		105.5
(-2.7)
P 		117.7
(-1.9)
P 		148.2
(-0.1)
P 		99
avr 129.1
(-0.7) 		153.5
(3) 		131
(-0.5) 		114.4
(-3) 		115.6
(-2.8) 		142.5
(1.3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 47.8
(2.3)
P 		27.3
(-3)
P 		33.2
(-1.5)
P 		50.7
(3)
P 		23
B 58.1
(3)
P 		35.4
(-1)
P 		24.2
(-3)
P 		47.8
(1.2)
P 		34
C 55.6
(3)
P 		33.7
(-3)
P 		41.8
(-0.8)
P 		43.4
(-0.3)
P 		22
avr 53.8
(3) 		32.1
(-3) 		33.1
(-2.7) 		47.3
(1.2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 25.5
(-3)
P 		53.7
(3)
P 		27.4
(-2.6)
P 		28.9
(-2.3)
P 		41.7
(0.4)
P 		38.9
(-0.1)
P 		28
B 51.7
(3)
P 		36.7
(-1.8)
P 		34.3
(-2.5)
P 		32.8
(-3)
P 		36.9
(-1.7)
P 		44.6
(0.7)
P 		19
C 37.1
(-0.6)
P 		60.8
(3)
P 		32
(-1.4)
P 		21.2
(-3)
P 		38.1
(-0.4)
P 		49.6
(1.3)
P 		40
avr 38.1
(-0.2) 		50.4
(3) 		31.2
(-2.1) 		27.6
(-3) 		38.9
(-0) 		44.4
(1.4) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185043_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6934
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.30 NCBI
Target Description Y56A3A.30 /REP_DB=WormBase Gene ID /WP=CE22595 /TR=Q9U234 /GB=CAB60506.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067161 NCBI Caenorhabditis elegans Y56A3A.30 (Y56A3A.30) mRNA, complete cds. 11/11 None
SNAP00000035206 ENSEMBL cdna:SNAP chromosome:CEL140:III:11968379:12002816:-1 10/11 None
GENEFINDER00000035225 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11974080:11978939:-1 11/11 None
Y56A3A.30 ENSEMBL cdna:known chromosome:CEL140:III:11974005:11978941:-1 gene:Y56A3A.30 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11974075-11978935(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y56A3A.30
Entrez Gene 176634 Entrez gene
SwissProt Q9U234 EMBL-EBI
WormBase CE22595 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60506 Hypothetical protein Y56A3A.30 [Caenorhabditis elegans] ref|NP_499562.1| Y56A3A.30 [Caenorhabditis elegans] 0.0
blast CAB60521 Hypothetical protein Y56A3A.33 [Caenorhabditis elegans] ref|NP_499565.1| Y56A3A.33 [Caenorhabditis elegans] 0.0
blast AAF39778 Hypothetical protein C51G7.1 [Caenorhabditis elegans] 1.0E-176
blast AAL68190 GH09355p [Drosophila melanogaster] 2.0E-11
blast AAF50015 CG6004-PB [Drosophila melanogaster] ref|NP_648504.1| CG6004-PB [Drosophila melanogaster] 2.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR006055 EMBL-EBI Exonuclease 5.6E-21
Pfam IPR005122 EMBL-EBI Uracil-DNA glycosylase superfamily 2.7E-62
Sequence
Target Sequence 
>C. ELEGANS:185043_S_AT
atgtagagccagagtccagttcaactgtagaatcacagagagatgaagatcaagcggttg
cgagcgcctcttccgtagctgaacctctggaagaagccactacaacgagtgtgccagagc
caacagagtttcaattgtcacgggacatttatagcactgtaaagccgactgatgaggctc
atagcccgccgattcaagcccaaccgaagaaaaaagccacgccaagacggaagaaagcag
atgacgtggaaactgtagtagctgacggaacagcgacgatcccgaagccgaagagaaaaa
ggccgccgaggaagaagcctgagccgaagccgaatatcgtttttgaaacaacgccgaatc
ctccgacagaaagcttcgcagccaacaacaatttccagcagttccagtttcaaaatcagc
ctggtagttggacctacaacaatggattcggcaatggatatgggtacggcggtggaacca
ctggatacatggataatcttgttggcagagggtttgacacggtttctcagcagcctggat
ttcagaatcaaggttacgaattcaccggtttgcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTAGAGCCAGAGTCCAGTTCAAC 90 47 1709 Antisense
AAGATCAAGCGGTTGCGAGCGCCTC 436 155 1754 Antisense
CTCTTCCGTAGCTGAACCTCTGGAA 649 229 1776 Antisense
ACAACGAGTGTGCCAGAGCCAACAG 611 107 1810 Antisense
CGACTGATGAGGCTCATAGCCCGCC 583 251 1874 Antisense
GAAGCCTGAGCCGAAGCCGAATATC 232 345 2022 Antisense
TCCTCCGACAGAAAGCTTCGCAGCC 658 591 2067 Antisense
TATGGGTACGGCGGTGGAACCACTG 323 651 2167 Antisense
AGAGGGTTTGACACGGTTTCTCAGC 166 21 2215 Antisense
GTTTCTCAGCAGCCTGGATTTCAGA 324 449 2230 Antisense
GGTTACGAATTCACCGGTTTGCCTG 510 503 2260 Antisense
Sequence Source Affymetrix Proprietary Database