[Home] | [Total List]

[185042_at]

Description Y46G5A.18 /REP_DB=WormBase Gene ID /WP=CE21995 /TR=Q9U2F1 /GB=CAB60360.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 55.8
(-2.6)
A 		126.6
(3)
A 		50.3
(-3)
A 		106.5
(1.4)
A 		76
B 44
(-3)
A 		115.7
(2.5)
A 		108.6
(1.9)
A 		122.5
(3)
A 		79
C 17
(-3)
A 		117.8
(3)
A 		102.7
(2.1)
A 		108.7
(2.5)
A 		101
avr 38.9
(-3) 		120
(3) 		87.2
(0.6) 		112.6
(2.5) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 121.2
(3)
A 		85
(-0.8)
A 		116.3
(2.5)
A 		108.7
(1.7)
A 		63.7
(-3)
A 		95.3
(0.3)
A 		58
B 125
(1.3)
A 		93.9
(-1.6)
A 		143.8
(3)
A 		116.7
(0.5)
A 		92.5
(-1.7)
A 		78.9
(-3)
A 		65
C 110.2
(3)
A 		65.8
(-1.7)
A 		97.8
(1.7)
A 		93.3
(1.2)
A 		106
(2.6)
A 		53.9
(-3)
A 		56
avr 118.8
(2.9) 		81.6
(-2.2) 		119.3
(3) 		106.2
(1.2) 		87.4
(-1.4) 		76
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 20.3
(0)
A 		27.5
(3)
A 		13.1
(-3)
A 		15.6
(-2)
A 		14
B 14
(-3)
A 		28.6
(3)
A 		25.2
(1.6)
A 		26.1
(2)
A 		15
C 5.6
(-3)
A 		33.9
(2.6)
A 		35.8
(3)
A 		18.3
(-0.5)
A 		30
avr 13.3
(-3) 		30
(3) 		24.7
(1.1) 		20
(-0.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 22.3
(-1.3)
A 		30.2
(3)
A 		25.3
(0.3)
A 		27.6
(1.6)
A 		19.2
(-3)
A 		23.2
(-0.8)
A 		11
B 43.5
(3)
A 		31.3
(-2.2)
A 		34.9
(-0.7)
A 		30.9
(-2.4)
A 		37.6
(0.5)
A 		29.4
(-3)
A 		14
C 40.8
(3)
A 		20.1
(-2.5)
A 		24.9
(-1.2)
A 		18.8
(-2.8)
A 		34.3
(1.3)
A 		18.1
(-3)
A 		23
avr 35.5
(3) 		27.2
(-1.2) 		28.4
(-0.6) 		25.8
(-1.9) 		30.4
(0.4) 		23.6
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185042_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2783
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.18 NCBI
Target Description Y46G5A.18 /REP_DB=WormBase Gene ID /WP=CE21995 /TR=Q9U2F1 /GB=CAB60360.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064321 NCBI Caenorhabditis elegans Y46G5A.18 (Y46G5A.18) mRNA, complete cds. 11/11 None
SNAP00000038998 ENSEMBL cdna:SNAP chromosome:CEL140:II:12800532:12805113:-1 11/11 None
GENEFINDER00000039042 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12800532:12805113:-1 11/11 None
Y46G5A.18 ENSEMBL cdna:known chromosome:CEL140:II:12800532:12805159:-1 gene:Y46G5A.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12800528-12805110(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.18
Entrez Gene 174913 Entrez gene
SwissProt Q9U2F1 EMBL-EBI
WormBase CE21995 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60360 Hypothetical protein Y46G5A.18 [Caenorhabditis elegans] ref|NP_496722.1| Y46G5A.18 [Caenorhabditis elegans] 0.0
blast CAE63439 Hypothetical protein CBG07887 [Caenorhabditis briggsae] 1.0E-148
Sequence
Target Sequence 
>C. ELEGANS:185042_AT
aatcgtcacctcgtgcagtgggaaaagcccgacgacgaaaaaggctggaaaacgtttctc
accgtattccggagccgcatgctttgatcgtatcgatccgaagagccgaatggcgttgct
cggcaagaaagtcaactgggcatttgtcgactttctggagcgagaactgcgcaacgtgtt
ccgaatcgacaaccgtaaccaacaggacactgaagccgtcttcatcggccactatccggc
ctcttcggaccgtcttttggcccatattgtggctcaatggcttgggctcagctcgcaaag
tatcacggatccgaacctcaacgagcgtatcactgaattccggaatcgtcgtcctctgat
tccgccgcaaacgacgcttatcgaccatctggaggcgagagttatgaagcgatgcatcga
atttgtgccattttcgatgagagatggtgctcaagaggagcccgtcgagcacgatttggc
attggatgtggatacttcgttcctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGTCACCTCGTGCAGTGGGAAA 493 167 534 Antisense
TATTCCGGAGCCGCATGCTTTGATC 691 663 598 Antisense
CAACTGGGCATTTGTCGACTTTCTG 498 187 666 Antisense
TGCGCAACGTGTTCCGAATCGACAA 142 585 701 Antisense
ACCGTCTTTTGGCCCATATTGTGGC 558 87 782 Antisense
TGTGGCTCAATGGCTTGGGCTCAGC 591 553 801 Antisense
GGCTCAGCTCGCAAAGTATCACGGA 207 539 818 Antisense
GGATCCGAACCTCAACGAGCGTATC 354 503 840 Antisense
CAAACGACGCTTATCGACCATCTGG 478 191 901 Antisense
AGCCCGTCGAGCACGATTTGGCATT 109 81 992 Antisense
TGGATGTGGATACTTCGTTCCTGCT 98 551 1016 Antisense
Sequence Source Affymetrix Proprietary Database