[Home] | [Total List]

[185037_at]

Description ZK470.2A /REP_DB=WormBase Gene ID /WP=CE05086 /TR=Q23505 /GB=AAA80395.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 72      6grp_total > 26      4grp_total > 19      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1045
1 2 3 4 range
A 470.2
(-2)
P 		512.7
(-1.8)
P 		319.1
(-3)
P 		1252
(3)
P 		933
B 469.5
(-2.1)
P 		629.4
(-1)
P 		333.7
(-3)
P 		1228.5
(3)
P 		895
C 343.3
(-2.9)
P 		590.7
(-1.5)
P 		325.2
(-3)
P 		1364.3
(3)
P 		1039
avr 427.7
(-2.4) 		577.6
(-1.4) 		326
(-3) 		1281.6
(3) 		956

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 524
(3)
P 		259.7
(-2.5)
P 		423.1
(0.9)
P 		237.7
(-3)
P 		445.4
(1.4)
P 		391.2
(0.2)
P 		286
B 508.2
(2.3)
P 		523.5
(3)
P 		426.8
(-1.7)
P 		400.9
(-3)
P 		401.5
(-3)
P 		433.8
(-1.4)
P 		123
C 257.5
(-3)
P 		639.6
(3)
P 		296.3
(-2.4)
P 		452.1
(0.1)
P 		287.1
(-2.5)
P 		358.9
(-1.4)
P 		382
avr 429.9
(0.6) 		474.3
(3) 		382.1
(-2) 		363.6
(-3) 		378
(-2.2) 		394.6
(-1.3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 171.2
(2.3)
P 		111.3
(-1.3)
P 		83.4
(-3)
P 		183.3
(3)
P 		100
B 149.7
(-0.6)
P 		155.4
(-0.5)
P 		77.3
(-3)
P 		261.8
(3)
P 		185
C 113.6
(-3)
P 		169.8
(-0.1)
P 		113.3
(-3)
P 		230
(3)
P 		117
avr 144.8
(-0.6) 		145.5
(-0.6) 		91.3
(-3) 		225
(3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 96.6
(-0.1)
P 		92.3
(-0.4)
P 		92.1
(-0.4)
P 		60.3
(-3)
P 		134.4
(3)
P 		95.3
(-0.2)
P 		74
B 176.8
(3)
P 		174.3
(2.8)
P 		103.6
(-3)
P 		106.2
(-2.8)
P 		163.1
(1.9)
P 		161.8
(1.8)
P 		73
C 95.5
(-2)
P 		195.2
(3)
P 		75.4
(-3)
P 		90.9
(-2.2)
P 		92.9
(-2.1)
P 		120.1
(-0.8)
P 		120
avr 123
(0.3) 		153.9
(3) 		90.4
(-2.6) 		85.8
(-3) 		130.1
(0.9) 		125.7
(0.5) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185037_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17262
Sequence Type Exemplar sequence
Representative Public ID ZK470.2A NCBI
Target Description ZK470.2A /REP_DB=WormBase Gene ID /WP=CE05086 /TR=Q23505 /GB=AAA80395.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171661(10), NM_076303(11), NM_076304(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171661 NCBI Caenorhabditis elegans ZK470.2c (ZK470.2) mRNA, complete cds. 10/11 A 
NM_076303 NCBI Caenorhabditis elegans ZK470.2a (ZK470.2) mRNA, complete cds. 11/11 None
NM_076304 NCBI Caenorhabditis elegans ZK470.2b (ZK470.2) mRNA, complete cds. 9/11 None
GENEFINDER00000000141 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4136919:4147196:1 10/11 None
SNAP00000000131 ENSEMBL cdna:SNAP chromosome:CEL140:X:4146185:4147196:1 10/11 None
ZK470.2c ENSEMBL cdna:known chromosome:CEL140:X:4135107:4147801:1 gene:ZK470.2 10/11 A 
ZK470.2a ENSEMBL cdna:known chromosome:CEL140:X:4145389:4147801:1 gene:ZK470.2 11/11 None
ZK470.2b.2 ENSEMBL cdna:known chromosome:CEL140:X:4146192:4147801:1 gene:ZK470.2 9/11 None
ZK470.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:4146417:4147801:1 gene:ZK470.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4145475-4147197(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK470.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA80393 Hypothetical protein ZK470.2c [Caenorhabditis elegans] ref|NP_741760.1| ZK470.2c [Caenorhabditis elegans] 1.0E-122
blast AAA80393 Hypothetical protein ZK470.2c [Caenorhabditis elegans] ref|NP_741760.1| ZK470.2c [Caenorhabditis elegans] 1.0E-109
blast AAA80395 Hypothetical protein ZK470.2a [Caenorhabditis elegans] ref|NP_508704.1| ZK470.2a [Caenorhabditis elegans] 4.0E-83
blast AAA80395 Hypothetical protein ZK470.2a [Caenorhabditis elegans] ref|NP_508704.1| ZK470.2a [Caenorhabditis elegans] 2.0E-72
blast AAA80393 Hypothetical protein ZK470.2c [Caenorhabditis elegans] ref|NP_741760.1| ZK470.2c [Caenorhabditis elegans] 6.0E-72
blast AAA80393 Hypothetical protein ZK470.2c [Caenorhabditis elegans] ref|NP_741760.1| ZK470.2c [Caenorhabditis elegans] 7.0E-72
blast CAE68528 Hypothetical protein CBG14352 [Caenorhabditis briggsae] 1.0E-71
Sequence
Target Sequence 
>C. ELEGANS:185037_AT
ggaactaatcaactcgagaccggcctccatttcccatgcagctcggcagctctgctgtct
caagagagtcttcatcagccaccacttcgcaagtcctcatcggccattgactggaacggc
gccgtcgtcgaagctactcgcaaaacttctaggcaattcgactggcaaaccgctttgttc
gacaacagccgcaagaccagcttctcgaacctccaaccattttcgcaagcacaacagggc
ggcttggttatgagcaatctggataataagcaacaaggaatgtccgtcgctactgcaacc
atgccacaacagcagaataattttgctcaaaccctttctcaatcgtcaagcactgcttct
gctccagcaccaacaagtgcgccagtcacaactccagctccaggatcaaggggagctgcc
ttgttcggaggagtcttccaccgtggattcttctcgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTAATCAACTCGAGACCGGCC 550 527 25 Antisense
TCGGCAGCTCTGCTGTCTCAAGAGA 597 605 67 Antisense
TCAAGAGAGTCTTCATCAGCCACCA 84 633 84 Antisense
GTCCTCATCGGCCATTGACTGGAAC 413 477 117 Antisense
TAGGCAATTCGACTGGCAAACCGCT 134 655 174 Antisense
GCAAACCGCTTTGTTCGACAACAGC 520 315 189 Antisense
AACAAGGAATGTCCGTCGCTACTGC 391 135 296 Antisense
TTTCTCAATCGTCAAGCACTGCTTC 102 671 359 Antisense
CAACTCCAGCTCCAGGATCAAGGGG 273 187 413 Antisense
GAGCTGCCTTGTTCGGAGGAGTCTT 222 387 437 Antisense
CTTCCACCGTGGATTCTTCTCGAAG 640 217 459 Antisense
Sequence Source Affymetrix Proprietary Database