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[185035_s_at]

Description C25A11.2 /REP_DB=WormBase Gene ID /WP=CE04072 /TR=Q18140 /GB=AAK39185.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 54      6grp_high1_10_10 > 45      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 71      6grp_total > 46      4grp_total > 52      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 320.1
(1.7)
P 		338.6
(3)
P 		287.5
(-0.5)
P 		251.2
(-3)
P 		87
B 297.9
(2.6)
P 		301.6
(3)
P 		301.1
(3)
P 		238.8
(-3)
P 		63
C 330.3
(3)
P 		296.9
(1)
P 		281
(-0)
P 		232.4
(-3)
P 		98
avr 316.1
(3) 		312.4
(2.7) 		289.9
(0.9) 		240.8
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 352.9
(3)
P 		333.9
(1.4)
P 		280.5
(-3)
P 		310.2
(-0.5)
P 		309.7
(-0.6)
P 		332.7
(1.3)
P 		72
B 331.6
(-0)
P 		377.4
(3)
P 		325.1
(-0.4)
P 		317.8
(-0.9)
P 		285.9
(-3)
P 		300.5
(-2)
P 		92
C 307.7
(-0.6)
P 		326.8
(0.3)
P 		390.4
(3)
P 		360.3
(1.7)
P 		251
(-3)
P 		360.1
(1.7)
P 		139
avr 330.7
(1.6) 		346
(3) 		332
(1.7) 		329.4
(1.4) 		282.2
(-3) 		331.1
(1.6) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 116.6
(3)
P 		73.5
(-0.2)
P 		75.2
(-0.1)
P 		36.8
(-3)
P 		80
B 95
(3)
P 		74.5
(0.2)
P 		69.8
(-0.4)
P 		50.9
(-3)
P 		44
C 109.3
(3)
P 		85.4
(1)
P 		97.9
(2)
P 		39.2
(-3)
P 		70
avr 107
(3) 		77.8
(0.3) 		81
(0.6) 		42.3
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 65
(-2.6)
P 		118.8
(3)
P 		61.1
(-3)
P 		78.7
(-1.2)
P 		93.5
(0.4)
P 		81
(-0.9)
P 		58
B 115.4
(1.7)
P 		125.6
(3)
P 		78.9
(-3)
P 		84.2
(-2.3)
P 		116.1
(1.8)
P 		112.1
(1.3)
P 		47
C 114.1
(2.2)
P 		99.7
(0.4)
P 		99.4
(0.4)
P 		72.5
(-3)
P 		81.2
(-1.9)
P 		120.5
(3)
P 		48
avr 98.2
(0.3) 		114.7
(3) 		79.8
(-2.8) 		78.5
(-3) 		96.9
(0) 		104.5
(1.3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185035_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17254
Sequence Type Exemplar sequence
Representative Public ID C25A11.2 NCBI
Target Description C25A11.2 /REP_DB=WormBase Gene ID /WP=CE04072 /TR=Q18140 /GB=AAK39185.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077138(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077138 NCBI Caenorhabditis elegans C25A11.2 (C25A11.2) mRNA, complete cds. 11/11 None
SNAP00000000372 ENSEMBL cdna:SNAP chromosome:CEL140:X:9114302:9116537:1 11/11 None
GENEFINDER00000000376 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9114302:9116537:1 11/11 None
C25A11.2 ENSEMBL cdna:known chromosome:CEL140:X:9114302:9116810:1 gene:C25A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9114300-9116536(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25A11.2
Entrez Gene 181149 Entrez gene
SwissProt Q18140 EMBL-EBI
WormBase CE30873 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39185 Hypothetical protein C25A11.2 [Caenorhabditis elegans] ref|NP_509539.2| C25A11.2 [Caenorhabditis elegans] 0.0
blast T15600 hypothetical protein C25A11.2 - Caenorhabditis elegans 0.0
blast CAE57280 Hypothetical protein CBG00185 [Caenorhabditis briggsae] 2.0E-99
Sequence
Target Sequence 
>C. ELEGANS:185035_S_AT
attgctcctcaacttccaaatgcatatgaatggtactatttcaaatgttgtacgcaattt
tgaagatcaaaccaagagaatcggtgattttgccatgcctggtctagtcacaggttatat
aaattgtcgtgataagaaaaggatcggcgtatgcaaggagcatctagctaacaatagtga
acacttgaacatgctctttttcaacacagtctttgaagattgcgggaaaaacgaaattac
cgtcaacgaggattctgatattgttcttgatgctcttgatatcatttatcatcgctccct
cgcaatcttcccagctcagatcaatcgcgttctggatttggcaggatactggctttcagc
cacaatgcatcgtttcatggagattgccattctgcattctacccatatctccgatagtgc
aaagctcgagttagccgctgagcatcattttgatatcattaagtacgttgcccgtcatcc
gcgctatgcctctacttaccatctctcgctaacggatgaggaaatcatgcaagttcgtat
cccagccgacaacgaggttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTCCTCAACTTCCAAATGCAT 327 7 1164 Antisense
AATCGGTGATTTTGCCATGCCTGGT 434 169 1242 Antisense
CATGCTCTTTTTCAACACAGTCTTT 325 211 1353 Antisense
CCCAGCTCAGATCAATCGCGTTCTG 309 259 1473 Antisense
GGCTTTCAGCCACAATGCATCGTTT 213 537 1514 Antisense
GGAGATTGCCATTCTGCATTCTACC 634 517 1542 Antisense
ATTCTACCCATATCTCCGATAGTGC 230 11 1559 Antisense
GTGCAAAGCTCGAGTTAGCCGCTGA 624 479 1580 Antisense
CTTACCATCTCTCGCTAACGGATGA 350 221 1658 Antisense
AATCATGCAAGTTCGTATCCCAGCC 319 171 1686 Antisense
TATCCCAGCCGACAACGAGGTTGAT 649 643 1701 Antisense
Sequence Source Affymetrix Proprietary Database