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[185033_at]

Description C41G11.2 /REP_DB=WormBase Gene ID /WP=CE06947 /TR=Q18562 /GB=AAA85744.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 06      4grp_total > 45      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 480.7
(3)
P 		477.4
(2.9)
A 		220.2
(-3)
A 		248.5
(-2.3)
P 		261
B 606.9
(3)
P 		339.3
(-1.2)
A 		226
(-3)
A 		236.8
(-2.8)
P 		381
C 490.1
(3)
P 		350
(-0.9)
A 		273.3
(-3)
A 		365.2
(-0.5)
A 		217
avr 525.9
(3) 		388.9
(0.1) 		239.8
(-3) 		283.5
(-2.1) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 529.2
(3)
P 		378.1
(0.5)
P 		166.6
(-3)
A 		272.1
(-1.3)
M 		223.4
(-2.1)
A 		211.4
(-2.3)
P 		363
B 458.6
(3)
P 		391.7
(1.7)
P 		237.7
(-1.5)
M 		328.4
(0.4)
M 		195.7
(-2.3)
A 		161
(-3)
A 		298
C 493.8
(3)
P 		309.1
(-0.4)
P 		300.9
(-0.5)
P 		198.5
(-2.4)
A 		251.7
(-1.4)
A 		165.9
(-3)
A 		328
avr 493.9
(3) 		359.6
(0.4) 		235.1
(-1.9) 		266.3
(-1.3) 		223.6
(-2.2) 		179.4
(-3) 		315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 175
(3)
P 		103.6
(-0.1)
A 		57.6
(-2.1)
A 		36.4
(-3)
P 		139
B 193.5
(3)
P 		83.8
(-1.6)
A 		52.4
(-2.9)
A 		50.5
(-3)
P 		143
C 162.2
(3)
P 		100.6
(-0.7)
A 		95.3
(-1)
A 		61.6
(-3)
A 		101
avr 176.9
(3) 		96
(-0.8) 		68.4
(-2.1) 		49.5
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 97.6
(0.7)
P 		134.5
(3)
P 		36.3
(-3)
A 		69
(-1)
M 		67.4
(-1.1)
A 		51.5
(-2.1)
P 		98
B 159.6
(3)
P 		130.4
(1.3)
P 		57.7
(-3)
M 		87
(-1.3)
M 		79.5
(-1.7)
A 		60
(-2.9)
A 		102
C 183
(3)
P 		94.3
(-0.7)
P 		76.6
(-1.5)
P 		39.9
(-3)
A 		81.4
(-1.3)
A 		55.6
(-2.3)
A 		143
avr 146.7
(3) 		119.7
(1.2) 		56.9
(-2.9) 		65.3
(-2.4) 		76.1
(-1.7) 		55.7
(-3) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185033_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16978
Sequence Type Exemplar sequence
Representative Public ID C41G11.2 NCBI
Target Description C41G11.2 /REP_DB=WormBase Gene ID /WP=CE06947 /TR=Q18562 /GB=AAA85744.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076563 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-6) (rgs-6) mRNA, complete cds. 11/11 A 
SNAP00000015675 ENSEMBL cdna:SNAP chromosome:CEL140:X:5720846:5724261:-1 11/11 None
GENEFINDER00000015681 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5720846:5724261:-1 11/11 None
C41G11.3 ENSEMBL cdna:known chromosome:CEL140:X:5720408:5728614:-1 gene:C41G11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5720845-5724234(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rgs-6
Ensembl C41G11.3
Entrez Gene 180840 Entrez gene
SwissProt Q18563 EMBL-EBI
WormBase CE30895 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA85744 Regulator of g protein signaling protein 6 [Caenorhabditis elegans] ref|NP_508964.2| Regulator of G protein Signaling family member (rgs-6) [Caenorhabditis elegans] sp|Q18563|RGS6_CAEEL Regulator of G-protein signaling rgs-6 0.0
blast T29512 hypothetical protein C41G11.2 - Caenorhabditis elegans 0.0
blast CAE68793 Hypothetical protein CBG14738 [Caenorhabditis briggsae] 1.0E-159
blast CAE68793 Hypothetical protein CBG14738 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 3.2E-20
Sequence
Target Sequence 
>C. ELEGANS:185033_AT
gctgctggcaccaatttcggtggatcagcaaatcaagtaaatgcaggcagcgccagtaca
tcatctaacaatgtgagcgaacccagcaagaaccggctgagcatttttaaaagtaaaacg
gagaaaaaagtagtcaagcctgaatcagaaaaagagaagctgaagcctcggtcagatgac
ataccaacaacgtccacttcaactcctatggcagttgaaacaaaaccgaatggtagccga
actactgaagaaccattgaaacggatgggcaagagcggcgacgatggatctcaggaaccg
caaggcattcgacacccggcaatcttttccacaaaaataggcgacgaggcggcggcggct
gcggctggagcatccccgtcaacatcagcaccgtcaacgtcgacatctgttcagacgaaa
acaacgacatctcccactaagtcgccgacatccacgacaatcacaacatccggaacgacg
acatcggcgacgagttcagtcgccactgcgccgccacctgtattacacgcaatgaggtcc
gcatcgactccagcaacaagttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCTGGCACCAATTTCGGTGGAT 332 297 760 Antisense
TGCAGGCAGCGCCAGTACATCATCT 56 579 801 Antisense
GACATACCAACAACGTCCACTTCAA 40 371 937 Antisense
GGATCTCAGGAACCGCAAGGCATTC 333 511 1045 Antisense
CGTCAACGTCGACATCTGTTCAGAC 310 247 1151 Antisense
AAACAACGACATCTCCCACTAAGTC 190 119 1178 Antisense
TAAGTCGCCGACATCCACGACAATC 551 637 1197 Antisense
GACAATCACAACATCCGGAACGACG 152 363 1215 Antisense
GACGACATCGGCGACGAGTTCAGTC 420 379 1236 Antisense
ACACGCAATGAGGTCCGCATCGACT 116 111 1284 Antisense
GCATCGACTCCAGCAACAAGTTCAC 614 307 1300 Antisense
Sequence Source Affymetrix Proprietary Database