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[185032_at]

Description C17H11.5 /REP_DB=WormBase Gene ID /WP=CE08293 /TR=P91066 /GB=AAB37986.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 12      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 67.4
(0.8)
A 		39
(-1.7)
A 		23.5
(-3)
A 		93.5
(3)
P 		70
B 49.3
(-3)
A 		55.3
(3)
A 		52.7
(0.4)
A 		52.4
(0.1)
P 		6
C 40.2
(-3)
P 		42.9
(-2.7)
A 		46.6
(-2.4)
A 		102.2
(3)
P 		62
avr 52.3
(-1.4) 		45.7
(-2.3) 		40.9
(-3) 		82.7
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 25
(-3)
A 		44.5
(-1)
A 		69
(1.4)
M 		52.5
(-0.2)
A 		72.3
(1.8)
P 		84.5
(3)
A 		60
B 41.8
(-1.3)
A 		31.4
(-2.1)
A 		31.4
(-2.1)
A 		20.8
(-3)
A 		95.2
(3)
P 		55.8
(-0.2)
P 		74
C 35.3
(-2.9)
P 		37.7
(-2.7)
M 		38
(-2.7)
A 		33.4
(-3)
A 		85
(0.1)
P 		132.2
(3)
P 		99
avr 34
(-3) 		37.9
(-2.6) 		46.1
(-1.7) 		35.6
(-2.8) 		84.2
(2.3) 		90.8
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 24.5
(3)
A 		8.5
(-2.2)
A 		6.1
(-3)
A 		13.7
(-0.5)
P 		18
B 15.7
(3)
A 		13.7
(0.3)
A 		12.2
(-1.7)
A 		11.2
(-3)
P 		5
C 13.3
(-1.8)
P 		12.3
(-3)
A 		16.3
(1.9)
A 		17.2
(3)
P 		5
avr 17.8
(3) 		11.5
(-3) 		11.5
(-3) 		14
(-0.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 4.6
(-3)
A 		15.8
(0.9)
A 		15
(0.6)
M 		13.3
(0)
A 		21.8
(3)
P 		20.6
(2.6)
A 		17
B 14.6
(-1.4)
A 		10.4
(-2.1)
A 		7.6
(-2.6)
A 		5.5
(-3)
A 		38.7
(3)
P 		20.8
(-0.2)
P 		33
C 13.1
(-2)
P 		11.5
(-2.2)
M 		9.7
(-2.5)
A 		6.7
(-3)
A 		27.5
(0.3)
P 		44.2
(3)
P 		38
avr 10.8
(-2.3) 		12.6
(-1.8) 		10.8
(-2.3) 		8.5
(-3) 		29.3
(3) 		28.5
(2.8) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185032_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16472
Sequence Type Exemplar sequence
Representative Public ID C17H11.5 NCBI
Target Description C17H11.5 /REP_DB=WormBase Gene ID /WP=CE08293 /TR=P91066 /GB=AAB37986.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076980(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076980 NCBI Caenorhabditis elegans C17H11.5 (C17H11.5) mRNA, complete cds. 11/11 None
SNAP00000009211 ENSEMBL cdna:SNAP chromosome:CEL140:X:8183043:8183476:-1 11/11 None
GENEFINDER00000009232 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8183043:8185055:-1 11/11 None
C17H11.5 ENSEMBL cdna:known chromosome:CEL140:X:8183043:8183476:-1 gene:C17H11.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8183041-8183475(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H11.5
Entrez Gene 182753 Entrez gene
SwissProt P91066 EMBL-EBI
WormBase CE08293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37986 Hypothetical protein C17H11.5 [Caenorhabditis elegans] ref|NP_509381.1| C17H11.5 [Caenorhabditis elegans] 2.0E-62
blast AAB37986 Hypothetical protein C17H11.5 [Caenorhabditis elegans] ref|NP_509381.1| C17H11.5 [Caenorhabditis elegans] 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:185032_AT
ccaggtcccataccacgaaataaattgaacgactgggttggagttcctccggtatgcccg
gaaaacgatgatggtgctattatagaattttcggttgcaatggaaacctgtagatatgat
tacatgaccatcaagtattggctcgactaccagagaatttccattgccgcaatgaaagtg
tacgatagaatgaaacgagaaaaatataatcgaccatgtaacgtagtaatacggttcatt
tgccgggctatcagattactctttggaatcgagaacaagaagcgctttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGGTCCCATACCACGAAATAAAT 274 269 31 Antisense
GAACGACTGGGTTGGAGTTCCTCCG 438 345 57 Antisense
CGGTATGCCCGGAAAACGATGATGG 498 243 80 Antisense
GACCATCAAGTATTGGCTCGACTAC 522 383 156 Antisense
GTATTGGCTCGACTACCAGAGAATT 174 453 165 Antisense
ACCAGAGAATTTCCATTGCCGCAAT 179 85 179 Antisense
ATTGCCGCAATGAAAGTGTACGATA 509 5 193 Antisense
ATAATCGACCATGTAACGTAGTAAT 101 1 236 Antisense
AATACGGTTCATTTGCCGGGCTATC 629 169 258 Antisense
GCCGGGCTATCAGATTACTCTTTGG 529 279 272 Antisense
GAATCGAGAACAAGAAGCGCTTTGA 379 329 296 Antisense
Sequence Source Affymetrix Proprietary Database