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[185031_at]

Description C05E4.12 /REP_DB=WormBase Gene ID /WP=CE07945 /TR=O17364 /GB=AAB71280.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 57
(0.5)
A 		10.3
(-3)
A 		44
(-0.4)
A 		89.4
(3)
P 		79
B 59.3
(0.5)
A 		62.3
(0.8)
A 		23.2
(-3)
A 		85.2
(3)
A 		62
C 30.4
(-1.8)
A 		6.5
(-3)
A 		26.7
(-2)
A 		128.9
(3)
P 		122
avr 48.9
(-1.2) 		26.4
(-3) 		31.3
(-2.6) 		101.2
(3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 67.8
(2.6)
A 		32.4
(-0.6)
A 		72.6
(3)
P 		50.6
(1)
A 		18.6
(-1.9)
A 		6.4
(-3)
A 		66
B 51.8
(3)
A 		33.4
(-1.1)
A 		44.5
(1.4)
A 		40.6
(0.5)
A 		33.2
(-1.1)
A 		24.8
(-3)
A 		27
C 9.1
(-3)
A 		51
(3)
A 		35.9
(0.8)
A 		10.1
(-2.9)
A 		9.1
(-3)
A 		43.1
(1.9)
A 		42
avr 42.9
(1.4) 		38.9
(0.6) 		51
(3) 		33.8
(-0.4) 		20.3
(-3) 		24.8
(-2.1) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.8
(3)
A 		2.2
(-3)
A 		11.5
(0)
A 		13.1
(0.5)
P 		19
B 18.9
(3)
A 		15.4
(1.4)
A 		5.4
(-3)
A 		18.2
(2.7)
A 		14
C 10.1
(-0.5)
A 		1.9
(-3)
A 		9.3
(-0.8)
A 		21.7
(3)
P 		20
avr 16.6
(2.4) 		6.5
(-3) 		8.7
(-1.8) 		17.7
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 12.5
(1.6)
A 		11.5
(1.2)
A 		15.8
(3)
P 		12.8
(1.7)
A 		5.6
(-1.3)
A 		1.6
(-3)
A 		14
B 18
(3)
A 		11.1
(-1.7)
A 		10.8
(-1.9)
A 		10.8
(-1.9)
A 		13.5
(-0.1)
A 		9.2
(-3)
A 		9
C 3.4
(-2.4)
A 		15.6
(3)
A 		9.1
(0.1)
A 		2
(-3)
A 		3
(-2.6)
A 		14.4
(2.5)
A 		14
avr 11.3
(1.4) 		12.7
(3) 		11.9
(2.1) 		8.5
(-1.8) 		7.4
(-3) 		8.4
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185031_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15868
Sequence Type Exemplar sequence
Representative Public ID C05E4.12 NCBI
Target Description C05E4.12 /REP_DB=WormBase Gene ID /WP=CE07945 /TR=O17364 /GB=AAB71280.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070916(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070916 NCBI Caenorhabditis elegans C05E4.12 (C05E4.12) mRNA, complete cds. 11/11 None
C05E4.12 ENSEMBL cdna:known chromosome:CEL140:V:757869:761783:-1 gene:C05E4.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000009776 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:757868-761783(-) 97.37 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E4.12
Entrez Gene 182265 Entrez gene
SwissProt O17364 EMBL-EBI
WormBase CE07945 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71280 Hypothetical protein C05E4.12 [Caenorhabditis elegans] ref|NP_503317.1| C05E4.12 [Caenorhabditis elegans] 0.0
blast AAA82431 Hypothetical protein F10E7.1 [Caenorhabditis elegans] ref|NP_495477.1| F10E7.1 [Caenorhabditis elegans] 5.0E-23
blast CAB07545 Hypothetical protein BE10.3 [Caenorhabditis elegans] ref|NP_499665.1| BE10.3 [Caenorhabditis elegans] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 1.5E-39
Sequence
Target Sequence 
>C. ELEGANS:185031_AT
ggtactgataccctgccaagttaaccgaatgtgcctagatgacaagattcttcatgacct
tgttttaaaagaattaatcggaccgaattataatcatttagaggattatatggtcatgta
cgacatttgtaggcaaggatgtgacatgtgctttcgcatttcagaaaattgtctgagata
tggtccacttcagtcactagttctcaaacggaataaacactacgaatcactcgaaataag
agacgataataaagttgtcggaaccgttggactcgcatacctctgcgataagaatgtttg
gagttttcaaattcgaaccaatcaattgtccctcaagaaattttcatttatgaaaattga
cccagtccttgagaaaaacgagtgggatttggaaaatgtgtccaatattgaagaagaaca
cggaaaagatccagagggaaagatagtgacttggaatggaaaagaattctgtttgaggaa
catcaacactaatggaattattaaattccatttgttttttgagttcaacttcctgacgta
ttttttcaaaaatcaaactgcagtgacaaaaaccggacttctttggcattatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTACTGATACCCTGCCAAGTTAAC 302 503 489 Antisense
GCCAAGTTAACCGAATGTGCCTAGA 685 277 503 Antisense
AGATTCTTCATGACCTTGTTTTAAA 19 67 533 Antisense
GTGACATGTGCTTTCGCATTTCAGA 141 483 629 Antisense
AATTGTCTGAGATATGGTCCACTTC 159 179 655 Antisense
TCCACTTCAGTCACTAGTTCTCAAA 26 589 672 Antisense
GTTGTCGGAACCGTTGGACTCGCAT 670 435 742 Antisense
TGGACTCGCATACCTCTGCGATAAG 218 549 756 Antisense
TTCGAACCAATCAATTGTCCCTCAA 461 693 800 Antisense
GAGTTCAACTTCCTGACGTATTTTT 162 399 1009 Antisense
AAACCGGACTTCTTTGGCATTATCG 680 125 1058 Antisense
Sequence Source Affymetrix Proprietary Database