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[185030_at]

Description Y67A10A.4 /REP_DB=WormBase Gene ID /WP=CE24565 /TR=Q9U1V5 /GB=CAB60445.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 66      6grp_total > 57      4grp_total > 29      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 49.5
(-0.5)
P 		34.7
(-2.1)
A 		25.8
(-3)
A 		82.4
(3)
P 		57
B 56
(3)
P 		38.2
(-0.1)
P 		21.5
(-3)
A 		31.5
(-1.3)
P 		35
C 83.6
(3)
P 		56.7
(0.8)
P 		11.4
(-3)
A 		64.8
(1.4)
P 		72
avr 63
(3) 		43.2
(0.3) 		19.6
(-3) 		59.6
(2.5) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 84.1
(3)
P 		52.2
(-0.2)
P 		48.3
(-0.6)
P 		24
(-3)
A 		43.7
(-1)
P 		74.9
(2.1)
P 		60
B 51.3
(-2.9)
P 		81.7
(-0.7)
P 		53.6
(-2.8)
P 		67
(-1.8)
P 		50.2
(-3)
P 		133
(3)
P 		83
C 67.3
(-1.2)
P 		74
(-0.8)
P 		36
(-3)
A 		36.8
(-3)
A 		46.1
(-2.4)
P 		140.6
(3)
P 		105
avr 67.6
(-1) 		69.3
(-0.8) 		46
(-2.7) 		42.6
(-3) 		46.7
(-2.7) 		116.2
(3) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 18
(3)
P 		7.5
(-2.6)
A 		6.7
(-3)
A 		12.1
(-0.1)
P 		11
B 17.9
(3)
P 		9.4
(-1)
P 		5
(-3)
A 		6.7
(-2.2)
P 		13
C 27.7
(3)
P 		16.3
(0.1)
P 		4
(-3)
A 		10.9
(-1.3)
P 		24
avr 21.2
(3) 		11.1
(-0.8) 		5.2
(-3) 		9.9
(-1.2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 15.5
(1.5)
P 		18.6
(3)
P 		10.5
(-0.9)
P 		6.1
(-3)
A 		13.2
(0.4)
P 		18.2
(2.8)
P 		13
B 17.8
(-2.2)
P 		27.2
(-0.7)
P 		13
(-3)
P 		17.7
(-2.2)
P 		20.4
(-1.8)
P 		49.6
(3)
P 		37
C 24.9
(-0.4)
P 		22.6
(-0.7)
P 		9.2
(-2.7)
A 		7.4
(-3)
A 		14.9
(-1.9)
P 		47.1
(3)
P 		40
avr 19.4
(-1.1) 		22.8
(-0.3) 		10.9
(-2.9) 		10.4
(-3) 		16.2
(-1.8) 		38.3
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185030_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9464
Sequence Type Exemplar sequence
Representative Public ID Y67A10A.4 NCBI
Target Description Y67A10A.4 /REP_DB=WormBase Gene ID /WP=CE24565 /TR=Q9U1V5 /GB=CAB60445.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070338 NCBI Caenorhabditis elegans Y67A10A.4 (Y67A10A.4) mRNA, complete cds. 11/11 None
SNAP00000008004 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14319801:14325612:-1 11/11 None
GENEFINDER00000008024 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14323353:14335608:-1 11/11 None
Y67A10A.4 ENSEMBL cdna:known chromosome:CEL140:IV:14323353:14325632:-1 gene:Y67A10A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14323358-14325618(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67A10A.4
Entrez Gene 178378 Entrez gene
SwissProt Q9U1V5 EMBL-EBI
WormBase CE24565 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60445 Hypothetical protein Y67A10A.4 [Caenorhabditis elegans] ref|NP_502739.1| Y67A10A.4 [Caenorhabditis elegans] 1.0E-173
blast CAB60445 Hypothetical protein Y67A10A.4 [Caenorhabditis elegans] ref|NP_502739.1| Y67A10A.4 [Caenorhabditis elegans] 1.0E-166
blast CAB60451 Hypothetical protein Y67A10A.5 [Caenorhabditis elegans] ref|NP_502738.1| Y67A10A.5 [Caenorhabditis elegans] 1.0E-144
blast NP_510671 F38E9.3 [Caenorhabditis elegans] 8.0E-54
blast CAA21768 Hypothetical protein T09F5.11 [Caenorhabditis elegans] emb|CAB05812.2| Hypothetical protein T09F5.11 [Caenorhabditis elegans] ref|NP_506746.1| T09F5.11 [Caenorhabditis elegans] 5.0E-28
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.8E-43
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.4E-7
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-35
Sequence
Target Sequence 
>C. ELEGANS:185030_AT
tggcattcggttatcttcaaagttttttgaaatccccacatttcaaagttgaaactttat
ttgttcatttttccgatgtaatgagagatgaaacattggaaatgttcaaaactatccgag
gcctgcgagttaaaaatgccgtttttgaaaatctgaatgaatatgagtacgcccagattt
tacaagctttcaaaccatgcaaactacggaatataactctttcaaatttcggatttatta
gcttagagcgagttgttcatttgaagcaatggaaaggtgccaaaaagttgacagcaattg
gaggatcttattcattgccaattgaaagtttattcaatttcgatgattttcatatagatt
tgctcacgttcacagaagaagacgctattaaaatcaaagacatcctcactgaatctgata
cttttcgtcgtggaattatcaacttcccaaatacaaaaatgaaaaaattcgcaaaacctt
tcgatacactctacgtcgatggaaaagccgatttaacaatcaaagccaacaacgcagttt
tcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCATTCGGTTATCTTCAAAGTTT 410 543 329 Antisense
GTTCAAAACTATCCGAGGCCTGCGA 77 439 432 Antisense
TACGCCCAGATTTTACAAGCTTTCA 463 649 496 Antisense
CAAGCTTTCAAACCATGCAAACTAC 53 187 511 Antisense
GGAGGATCTTATTCATTGCCAATTG 174 517 628 Antisense
ATAGATTTGCTCACGTTCACAGAAG 110 23 682 Antisense
AAGACATCCTCACTGAATCTGATAC 163 153 725 Antisense
GAATCTGATACTTTTCGTCGTGGAA 270 329 739 Antisense
GTCGTGGAATTATCAACTTCCCAAA 272 467 755 Antisense
AAACCTTTCGATACACTCTACGTCG 28 125 802 Antisense
CAAAGCCAACAACGCAGTTTTCAAT 18 193 849 Antisense
Sequence Source Affymetrix Proprietary Database