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[185028_at]

Description W04H10.1 /REP_DB=WormBase Gene ID /WP=CE14600 /TR=O44852 /GB=AAB95012.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 2.1
(-3)
A 		14.7
(-2.2)
A 		24.3
(-1.6)
A 		98.4
(3)
A 		96
B 5.1
(-3)
A 		9.9
(-2.5)
A 		10.3
(-2.4)
A 		59.7
(3)
A 		55
C 7.7
(-3)
A 		7.4
(-3)
A 		24.4
(-2.5)
A 		198.9
(3)
A 		192
avr 5
(-3) 		10.7
(-2.7) 		19.7
(-2.2) 		119
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 26.4
(0.4)
A 		24.6
(0.1)
A 		23.7
(-0)
A 		3.6
(-3)
A 		31.6
(1.1)
A 		44.4
(3)
A 		41
B 27.4
(2.9)
A 		7.8
(-1.9)
A 		3.3
(-3)
A 		6.7
(-2.2)
A 		26.1
(2.6)
A 		27.9
(3)
A 		25
C 8.2
(-3)
A 		29.9
(2.7)
A 		30.9
(3)
A 		28.6
(2.4)
A 		23.9
(1.1)
A 		21.2
(0.4)
A 		23
avr 20.7
(-0.5) 		20.8
(-0.4) 		19.3
(-0.9) 		13
(-3) 		27.2
(1.7) 		31.2
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 0.8
(-3)
A 		3.2
(-1.9)
A 		6.3
(-0.6)
A 		14.4
(3)
A 		14
B 1.6
(-3)
A 		2.4
(-2.6)
A 		2.4
(-2.6)
A 		12.7
(3)
A 		11
C 2.6
(-2.9)
A 		2.1
(-3)
A 		8.5
(-1.8)
A 		33.5
(3)
A 		31
avr 1.7
(-3) 		2.6
(-2.7) 		5.7
(-1.7) 		20.2
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4.9
(-0.6)
A 		8.7
(1.7)
A 		5.2
(-0.4)
A 		0.9
(-3)
A 		9.5
(2.2)
A 		10.8
(3)
A 		10
B 9.5
(2.3)
A 		2.6
(-1.9)
A 		0.8
(-3)
A 		1.8
(-2.4)
A 		10.6
(3)
A 		10.4
(2.9)
A 		10
C 3.1
(-3)
A 		9.1
(3)
A 		7.9
(1.8)
A 		5.8
(-0.3)
A 		7.7
(1.6)
A 		7.1
(1)
A 		6
avr 5.8
(-0.3) 		6.8
(0.6) 		4.6
(-1.4) 		2.8
(-3) 		9.3
(2.9) 		9.4
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5608
Sequence Type Exemplar sequence
Representative Public ID W04H10.1 NCBI
Target Description W04H10.1 /REP_DB=WormBase Gene ID /WP=CE14600 /TR=O44852 /GB=AAB95012.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061369 NCBI Caenorhabditis elegans W04H10.1 (W04H10.1) mRNA, complete cds. 11/11 None
SNAP00000015253 ENSEMBL cdna:SNAP chromosome:CEL140:II:609077:609338:1 11/11 None
W04H10.1 ENSEMBL cdna:known chromosome:CEL140:II:609077:609338:1 gene:W04H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:609076-609338(+) 100.0 100.0
chrII:614262-614522(+) 96.71 96.71
Public Domain and Genome References
Gene Title
Ensembl W04H10.1
Entrez Gene 189205 Entrez gene
SwissProt O44852 EMBL-EBI
WormBase CE14600 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95012 Hypothetical protein W04H10.1 [Caenorhabditis elegans] ref|NP_493770.1| W04H10.1 [Caenorhabditis elegans] 7.0E-34
blast CAE62893 Hypothetical protein CBG07081 [Caenorhabditis briggsae] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:185028_AT
gagtttgttggtgcaattcgacgaattcaaggggcacagccatgagcaattcatggaaga
gctggacacaattatgctggtttccatcaataaattgcatgacaacatggatcttcgtcg
ccgtcttttgatttactcggtattcggaaaagtgttccaacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTGTTGGTGCAATTCGACGAA 595 397 15 Antisense
TTCGACGAATTCAAGGGGCACAGCC 253 683 31 Antisense
AGGGGCACAGCCATGAGCAATTCAT 336 55 44 Antisense
CAATTCATGGAAGAGCTGGACACAA 121 177 61 Antisense
GACACAATTATGCTGGTTTCCATCA 653 365 79 Antisense
TGCTGGTTTCCATCAATAAATTGCA 67 579 89 Antisense
GCATGACAACATGGATCTTCGTCGC 667 309 111 Antisense
TGACAACATGGATCTTCGTCGCCGT 87 571 114 Antisense
CGTCGCCGTCTTTTGATTTACTCGG 514 243 130 Antisense
GTCTTTTGATTTACTCGGTATTCGG 171 467 137 Antisense
GGTATTCGGAAAAGTGTTCCAACAT 443 505 153 Antisense
Sequence Source Affymetrix Proprietary Database