[Home] | [Total List]

[185027_at]

Description H24K24.1 /REP_DB=WormBase Gene ID /WP=CE23820 /TR=Q9N5K8 /GB=AAF39897.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 01      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 6.3
(-2.6)
A 		4.1
(-3)
A 		7.7
(-2.4)
A 		40.9
(3)
A 		37
B 15.5
(3)
A 		10.4
(0.6)
A 		2.9
(-3)
A 		12.1
(1.4)
A 		13
C 3.1
(-3)
A 		6
(-2.6)
A 		16.8
(-0.9)
A 		42.9
(3)
A 		40
avr 8.3
(-2.6) 		6.8
(-3) 		9.1
(-2.5) 		32
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 35.2
(3)
A 		4.1
(-2.9)
A 		6.2
(-2.5)
A 		3.4
(-3)
A 		6.9
(-2.3)
A 		7.8
(-2.2)
A 		32
B 3.9
(-2.9)
A 		7.4
(-1.1)
A 		3.9
(-2.9)
A 		3.8
(-3)
A 		5.1
(-2.3)
A 		15.3
(3)
A 		12
C 7.1
(1.5)
A 		4
(-2.9)
A 		8.2
(3)
A 		6.5
(0.6)
A 		3.9
(-3)
A 		4.4
(-2.3)
A 		4
avr 15.4
(3) 		5.2
(-2.7) 		6.1
(-2.2) 		4.6
(-3) 		5.3
(-2.6) 		9.2
(-0.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.3
(-1.4)
A 		0.9
(-3)
A 		2
(-1.7)
A 		6
(3)
A 		5
B 4.9
(3)
A 		2.6
(-0.3)
A 		0.7
(-3)
A 		2.6
(-0.3)
A 		4
C 1
(-3)
A 		1.7
(-2.3)
A 		5.9
(1.7)
A 		7.2
(3)
A 		6
avr 2.7
(-1.3) 		1.7
(-3) 		2.9
(-1) 		5.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.5
(3)
A 		1.4
(-2.5)
A 		1.3
(-2.6)
A 		0.9
(-3)
A 		2.1
(-1.7)
A 		1.9
(-1.9)
A 		6
B 1.4
(-2.4)
A 		2.5
(-1)
A 		0.9
(-3)
A 		1
(-2.9)
A 		2.1
(-1.5)
A 		5.7
(3)
A 		5
C 2.6
(3)
A 		1.2
(-3)
A 		2.1
(0.9)
A 		1.3
(-2.6)
A 		1.3
(-2.6)
A 		1.5
(-1.7)
A 		1
avr 3.5
(3) 		1.7
(-1.5) 		1.4
(-2.3) 		1.1
(-3) 		1.8
(-1.3) 		3
(1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15515
Sequence Type Exemplar sequence
Representative Public ID H24K24.1 NCBI
Target Description H24K24.1 /REP_DB=WormBase Gene ID /WP=CE23820 /TR=Q9N5K8 /GB=AAF39897.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000006373 ENSEMBL cdna:SNAP chromosome:CEL140:V:929740:930051:1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039761 1/11 Cross Hyb Matching Probes None
Y52B11A.6 1/11 Cross Hyb Matching Probes None
M04D5.2 1/11 Cross Hyb Matching Probes None
C39H7.2 1/11 Cross Hyb Matching Probes None
F44C4.6 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:185027_AT
ctctccacatccgacatggtttaatgtacctttttttctctcataccacgatgaaggatt
tggagagtcttcttgagaatgtttatcattcacatgtcccccactataataccatacaca
attggttccaacattccgagaaggaagacgtctctctcgaggaccaagagacccataaat
tggatttggatgagtttaagaaagccgtggcaacggatcctttccaagtcacccgagagc
tgtcaaccgtgcttggatcttatcaattcaacattgtgcggggcttggaagctcccggaa
tgaataaaattatgggtcgattcatacctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCCACATCCGACATGGTTTAAT 13 233 29 Antisense
AATGTTTATCATTCACATGTCCCCC 354 139 106 Antisense
ATGTCCCCCACTATAATACCATACA 124 47 122 Antisense
CAATTGGTTCCAACATTCCGAGAAG 693 179 147 Antisense
GAAGGAAGACGTCTCTCTCGAGGAC 278 333 168 Antisense
AAGAAAGCCGTGGCAACGGATCCTT 402 151 226 Antisense
AGAGCTGTCAACCGTGCTTGGATCT 548 69 264 Antisense
GTGCTTGGATCTTATCAATTCAACA 405 479 277 Antisense
CAATTCAACATTGTGCGGGGCTTGG 337 167 292 Antisense
TGCGGGGCTTGGAAGCTCCCGGAAT 217 581 305 Antisense
AATTATGGGTCGATTCATACCTCAC 554 175 336 Antisense
Sequence Source Affymetrix Proprietary Database